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Detailed information on CNT3062262


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523536Arabidopsis lyrataSetaria italica43.0741.7781.78236forward
CNT30640872Arabidopsis lyrataNymphaea colorata58.3942.2781.56320forward
CNT30536082Arabidopsis lyrataEucalyptus grandis63.3258.6183347forward
CNT30315993Arabidopsis lyrataCorylus avellana71.5339.0882.91392forward
CNT30549101Arabidopsis lyrataIpomoea triloba47.4544.0782.31260forward
CNT30516792Arabidopsis lyrataJuglans regia68.2542.0281.55374forward
CNT30700558Arabidopsis lyrataQuercus lobata45.892.9682.47251forward
CNT30376704Arabidopsis lyrataArabidopsis thaliana10069.5497.26548forward
CNT30500604Arabidopsis lyrataCoffea canephora67.1559.8483.15368forward
CNT30616515Arabidopsis lyrataSesamum indicum84.6768.8481.25464forward
CNT30267761Arabidopsis lyrataChenopodium quinoa81.3954.6680.94446forward
CNT3021339Arabidopsis lyrataCitrullus lanatus72.6362.7881.41398forward
CNT30727661Arabidopsis lyrataCorchorus capsularis88.6977.6481.28486forward
CNT30378927Arabidopsis lyrataManihot esculenta67.759.9480.59371forward
CNT30403782Arabidopsis lyrataBeta vulgaris35.9547.1383.76197forward
CNT30524932Arabidopsis lyrataPhaseolus vulgaris45.2652.8880.65248forward
CNT30628927Arabidopsis lyrataVigna unguiculata62.2360.8980.35341forward
CNT30195835Arabidopsis lyrataPisum sativum45.2697.6481.05248forward
CNT30489068Arabidopsis lyrataOlea europaea36.6840.6984.58201forward
CNT30506120Arabidopsis lyrataNicotiana attenuata70.4465.9879.79386forward
CNT30710467Arabidopsis lyrataGlycine max45.834.7283.27251forward
CNT3042435Arabidopsis lyrataPrunus dulcis83.0365.7580.44455forward
CNT3091613Arabidopsis lyrataSolanum tuberosum74.8254.2380.49410forward
CNT30307041Arabidopsis lyrataTriticum aestivum49.0950.1981.04269forward
CNT30400271Arabidopsis lyrataTriticum turgidum49.6454.9581.25272forward
CNT30559890Arabidopsis lyrataActinidia chinensis73.545981.89403forward
CNT3087851Arabidopsis lyrataVigna radiata51.8231.0781.69284forward
CNT30234460Arabidopsis lyrataBrassica oleracea93.9873.2687.57515forward
CNT30508904Arabidopsis lyrataSolanum lycopersicum85.2275.5780.3467forward
CNT30554779Arabidopsis lyrataOryza glaberrima58.5834.3381.93321forward
CNT30145737Arabidopsis lyrataMedicago truncatula44.7139.7782.04245forward
CNT30256659Arabidopsis lyrataAvena sativa49.0937.6281.04269forward
CNT30311656Arabidopsis lyrataCamelina sativa94.8993.6990.77520forward
CNT3079663Arabidopsis lyrataBrassica juncea92.795.4989.76508forward
CNT30263459Arabidopsis lyrataBrassica rapa100101.2985.22548forward
CNT30468644Arabidopsis lyrataSaccharum spontaneum52.5530.6182.29288forward
CNT30141877Arabidopsis lyrataLolium perenne43.0752.6883.47236forward
CNT3017147Arabidopsis lyrataZea mays63.6948.8182.23349forward
CNT30605857Arabidopsis lyrataGossypium raimondii72.0848.7182.53395forward
CNT30216750Arabidopsis lyrataKalanchoe fedtschenkoi69.3477.5578.68380forward
CNT3067990Arabidopsis lyrataLeersia perrieri60.7787.481.38333forward
CNT30648676Arabidopsis lyrataRosa chinensis95.0769.9381.57521forward
CNT30205386Arabidopsis lyrataHelianthus annuus62.7748.1179.94344forward
CNT30625547Arabidopsis lyrataDaucus carota65.3334.4979.05358forward
CNT30688162Arabidopsis lyrataTriticum urartu56.245.8380.19308forward
CNT30341751Arabidopsis lyrataEragrostis tef60.0467.9881.16329forward
CNT30476941Arabidopsis lyrataArabidopsis halleri10068.4196.9548forward
CNT30366857Arabidopsis lyrataSorghum bicolor72.6340.5381.91398forward
CNT30596736Arabidopsis lyrataOryza meridionalis45.2632.8582.66248forward
CNT30354836Arabidopsis lyrataLactuca sativa58.2155.2980.25319forward
CNT30370935Arabidopsis lyrataOryza glumipatula46.926.5582.1257forward
CNT30154777Arabidopsis lyrataPrunus persica97.2666.6279.92533forward
CNT30573855Arabidopsis lyrataVitis vinifera86.578.7481.01474forward
CNT30705862Arabidopsis lyrataPrunus avium72.0837.1979.24395forward
CNT30642143Arabidopsis lyrataCannabis sativa68.6191.4881.12376forward
CNT3027877Arabidopsis lyrataTheobroma cacao50.3669.8783.7276forward
CNT3051702Arabidopsis lyrataAmborella trichopoda78.169.9380.14428forward
CNT30121168Arabidopsis lyrataCitrus clementina66.0634.0983.43362forward
CNT3035176Arabidopsis lyrataCucumis melo68.868.5581.96377forward
CNT30330867Arabidopsis lyrataDioscorea rotundata59.8545.3779.27328forward
CNT30103004Arabidopsis lyrataOryza rufipogon58.5832.281.62321forward
CNT30577473Arabidopsis lyrataOryza barthii43.0743.381.36236forward
CNT30584450Arabidopsis lyrataEchinochloa crusgalli67.749.5381.94371forward
CNT30497833Arabidopsis lyrataDigitaria exilis63.6939.5782.52349forward
CNT30176441Arabidopsis lyrataVigna angularis66.6160.3379.73365forward
CNT30558075Arabidopsis lyrataPanicum hallii39.2327.2583.26215forward
CNT30551544Arabidopsis lyrataOryza brachyantha63.8750.3681.14350forward
CNT30114394Arabidopsis lyrataFicus carica31.0228.5784.71170forward
CNT30335475Arabidopsis lyrataCynara cardunculus47.2619.9480.69259forward
CNT3049385Arabidopsis lyrataCucumis sativus51.2835.4885.41281forward

Expression of CNT3062262

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MLGCKMVKLGCKKERLGCMLVKLGYMQAKSGCNLGT*

Sequence

>CNT3062262
TGTAGGGGCTAGCTGGTGATAGTCTTGCATTGCTAGGAGAGTAAGCTATAGATGGGCTGTATTTGGCAGACTGAGGGTTGTAGCTTGGAGACGTAGGACC
GTAGCTTGGTGATGTTGGACTGTAACTTGGTGAAGTAGGGCTGTAGCCAGGAGATGTGGGGCTATATGCGGGTGAAGTAGGACTATAAGACGGTGATGTG
GGACTGTAAGATGGTGAAGTAGGGCTGTAAGAAGGCGATGTTGGGCTGTAAGATGGTGAAGTTGGGCTGTAAGAAGGAGAGGTTGGGCTGTATGCTGGTG
AAGTTGGGCTATATGCAGGCGAAGTCGGGCTGTAACTTGGGGACGTAGGGCTGTAGCTCGGAGATGTCGGGCTGTAGCTTGGCGACGTAGGGCTATAGCT
TGGAGATGTTGGGCTGTAGCTCGGAGAGGTAGGAGAATAGGAAGGACTTGTAGGAGAATAAGCAGGGCTTGTTGGGCTATAGCCAGGAGAACTGGGACTG
TAGGTAGGCGAAGTTGGACTATAACCGGGAGAAGTCGGGCTATATCCA