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Detailed information on CNT3027877


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30536082Theobroma cacaoEucalyptus grandis96.264.1983.16380forward
CNT30315993Theobroma cacaoCorylus avellana58.4823.0387.88231forward
CNT30700805Theobroma cacaoQuercus lobata73.4295.7184.83290forward
CNT30377104Theobroma cacaoArabidopsis thaliana62.0334.784.9245forward
CNT30500604Theobroma cacaoCoffea canephora72.6646.6782.93287forward
CNT30269286Theobroma cacaoChenopodium quinoa74.9445.0582.43296forward
CNT30727661Theobroma cacaoCorchorus capsularis93.1658.7993.21368forward
CNT30378927Theobroma cacaoManihot esculenta84.8154.1284.48335forward
CNT30403468Theobroma cacaoBeta vulgaris75.738.6382.61299forward
CNT30524942Theobroma cacaoPhaseolus vulgaris96.256.6381.84380forward
CNT30628902Theobroma cacaoVigna unguiculata96.285.7881.58380forward
CNT30489027Theobroma cacaoOlea europaea51.3958.6783.25203forward
CNT30506120Theobroma cacaoNicotiana attenuata53.1635.982.86210forward
CNT30710467Theobroma cacaoGlycine max98.4853.880.21389forward
CNT3042435Theobroma cacaoPrunus dulcis84.0547.9884.64332forward
CNT30307041Theobroma cacaoTriticum aestivum39.2428.9285.16155forward
CNT30400271Theobroma cacaoTriticum turgidum39.2431.3185.16155forward
CNT30559890Theobroma cacaoActinidia chinensis74.4343.0583.33294forward
CNT30591858Theobroma cacaoMusa acuminata91.6571.480.66362forward
CNT30554721Theobroma cacaoOryza glaberrima69.6229.4181.82275forward
CNT30145737Theobroma cacaoMedicago truncatula84.0553.982.23332forward
CNT30256655Theobroma cacaoAvena sativa28.6125.1788.5113forward
CNT30311670Theobroma cacaoCamelina sativa85.5761.3482.84338forward
CNT3062262Theobroma cacaoArabidopsis lyrata69.8750.3683.7276forward
CNT3079663Theobroma cacaoBrassica juncea74.1855.0882.59293forward
CNT30263848Theobroma cacaoBrassica rapa58.2354.3782.17230forward
CNT30605857Theobroma cacaoGossypium raimondii105.3251.2988.46416forward
CNT30713436Theobroma cacaoMalus domestica golden48.6159.6384.9192forward
CNT30625547Theobroma cacaoDaucus carota62.0323.681.63245forward
CNT30688491Theobroma cacaoTriticum urartu47.5943.9382.98188forward
CNT30341749Theobroma cacaoEragrostis tef50.6344.9485.5200forward
CNT30476941Theobroma cacaoArabidopsis halleri62.0330.5984.9245forward
CNT30366505Theobroma cacaoSorghum bicolor73.4245.8981.38290forward
CNT30620243Theobroma cacaoCajanus cajan51.3961.1485.22203forward
CNT30596736Theobroma cacaoOryza meridionalis58.2330.4683.04230forward
CNT30354661Theobroma cacaoLactuca sativa68.8648.9280.51272forward
CNT30154777Theobroma cacaoPrunus persica97.7248.2583.42386forward
CNT30410012Theobroma cacaoPapaver somniferum90.8994.4780.5359forward
CNT30574023Theobroma cacaoVitis vinifera10071.0479.49395forward
CNT3051546Theobroma cacaoAmborella trichopoda86.3370.7580.94341forward
CNT30109704Theobroma cacaoOryza longistaminata47.5933.8183.51188forward
CNT30121049Theobroma cacaoCitrus clementina93.1634.0185.05368forward
CNT3035176Theobroma cacaoCucumis melo97.7270.1880.57386forward
CNT30103220Theobroma cacaoOryza rufipogon91.1438.7579.44360forward
CNT30577473Theobroma cacaoOryza barthii55.9540.5582.35221forward
CNT30176441Theobroma cacaoVigna angularis93.9261.3280.86371forward
CNT30114394Theobroma cacaoFicus carica46.3330.7684.7183forward
CNT30335475Theobroma cacaoCynara cardunculus67.3420.4881.58266forward

Expression of CNT3027877

Peptides detected in this lncRNA

>peptide 1 (35 aa)
VKLDYKDLTETTLDCLVSTQEMDCTWLTVDCNLER*

>peptide 2 (43 aa)
MMGMLGCMMETWGYMRVKWGCMLVKLDYSWEMWDYNLVKWDCNL

Sequence

>CNT3027877
GGTGAAGTTGGACTATAAGGACTTGACGGAGACAACCTTGGACTGCTTGGTGAGTACGCAAGAGATGGACTGTACTTGGCTGACTGTGGATTGTAACTTG
GAGAGGTAGGACTATAGCTTGGTGATGTGGGACTATAACTTGGTGAGGTTGGACTGTACCCTGGAGAAGTGGGGCTATAAGCTGGTGAAGTAGGGCTGTA
TGATGGAGATGTGGGGCTATAGGAGGGTGAGGTTGGGCTGTAAGAAGGAGATGTAGGGCTGTATGATGGGGATGTTGGGCTGTATGATGGAGACGTGGGG
CTATATGCGGGTGAAGTGGGGCTGTATGCTGGTGAAGTTGGACTATAGCTGGGAGATGTGGGACTATAACTTGGTGAAGTGGGACTGTAACTTGG