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Detailed information on CNT30114394


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30536042Ficus caricaEucalyptus grandis46.8950.7379.57279forward
CNT30315993Ficus caricaCorylus avellana47.0627.9286.07280forward
CNT30549101Ficus caricaIpomoea triloba26.5526.7884.18158forward
CNT30516792Ficus caricaJuglans regia47.2331.5783.27281forward
CNT30700805Ficus caricaQuercus lobata50.2598.6880.94299forward
CNT30377104Ficus caricaArabidopsis thaliana28.5724.0884.71170forward
CNT30500730Ficus caricaCoffea canephora27.0618.6381.99161forward
CNT30616511Ficus caricaSesamum indicum32.4429.5681.87193forward
CNT3021339Ficus caricaCitrullus lanatus41.1838.6480.41245forward
CNT30727660Ficus caricaCorchorus capsularis30.5933.2784.62182forward
CNT30378908Ficus caricaManihot esculenta29.0818.3384.39173forward
CNT30403662Ficus caricaBeta vulgaris40.345080.83240forward
CNT30628922Ficus caricaVigna unguiculata16.4739.0484.6998forward
CNT30506121Ficus caricaNicotiana attenuata29.7542.7583.05177forward
CNT30710529Ficus caricaGlycine max29.2430.8582.76174forward
CNT3042412Ficus caricaPrunus dulcis45.8836.8484.25273forward
CNT3091337Ficus caricaSolanum tuberosum29.7521.6984.75177forward
CNT30591858Ficus caricaMusa acuminata40.1747.1480.75239forward
CNT30508722Ficus caricaSolanum lycopersicum29.7534.585.31177forward
CNT30312353Ficus caricaCamelina sativa24.0334.8885.31143forward
CNT3062262Ficus caricaArabidopsis lyrata28.5731.0284.71170forward
CNT3079663Ficus caricaBrassica juncea31.0934.7782.7185forward
CNT30608057Ficus caricaGossypium raimondii48.448.5779.86288forward
CNT30216750Ficus caricaKalanchoe fedtschenkoi38.1546.3378.41227forward
CNT3067990Ficus caricaLeersia perrieri17.9828.0885.98107forward
CNT30648253Ficus caricaRosa chinensis48.2443.0381.88287forward
CNT30205386Ficus caricaHelianthus annuus29.0824.283.82173forward
CNT30713436Ficus caricaMalus domestica golden45.7184.4783.46272forward
CNT30625385Ficus caricaDaucus carota42.8625.3280.39255forward
CNT30476941Ficus caricaArabidopsis halleri28.5721.2285.29170forward
CNT30154708Ficus caricaPrunus persica44.3780.2485.61264forward
CNT30705868Ficus caricaPrunus avium45.8825.7187.55273forward
CNT30642003Ficus caricaCannabis sativa44.713986.47266forward
CNT3027877Ficus caricaTheobroma cacao30.7646.3384.7183forward
CNT3051546Ficus caricaAmborella trichopoda27.0633.482.61161forward
CNT3023318Ficus caricaPopulus trichocarpa45.2142.0381.41269forward
CNT30121063Ficus caricaCitrus clementina29.2436.3387.36174forward
CNT3035160Ficus caricaCucumis melo45.7153.9779.78272forward
CNT30330871Ficus caricaDioscorea rotundata39.6632.6480.51236forward
CNT30577473Ficus caricaOryza barthii23.5325.6982.86140forward

Expression of CNT30114394

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MLGYSWVRLDYSQEKWDYRRVKWDCRMEMWDCRRVTSGCMKAMLGCRKVMWGCKMAMW

>peptide 2 (33 aa)
WDCMWGLKENKMEMWVNKMVMLGCNKNDKFNDE*

Sequence

>CNT30114394
CTGGGACTGTATGTGGGGCTTGAAGGAGAATAAGATGGAGATGTGGGTGAATAAGATGGTGATGTTGGGCTGCAACAAAAATGACAAGTTCAACGATGAG
TAAAATGCTCCACCTCTAAACATCGGTGCCATATCATTGAAAATTTACGAGTATTAAACAGGCCAAGAGCCCGAGACTTTGTTTTGAACACGCCAACCAA
GCAACTTCACTAAAAGGATTTAGCACACAACAGTAGTGACTGACTTTCAAGAGCAAGGAAATCGCTGATGCCACAATGAAATCTATGCCATTTCCAAGAA
AGCTTACCTGTAATTCGGAGATGTAGGACTATATGGGCTAGATGGTGACAACCTGGGACTGCTCGGAGAGTATGCCAGTGACGGGCTGTATTTTGCCGAC
TGAGGATTGAAACTTGGAGATGTTGGGCTATAGCTGGGTGAGGTTGGACTATAGCCAGGAGAAGTGGGACTATAGGCGGGTGAAGTGGGACTGTAGGATG
GAGATGTGGGACTGTAGGAGGGTGACGTCGGGCTGTATGAAGGCGATGTTGGGCTGTAGGAAGGTGATGTGGGGCTGTAAGATGGCGATGTGGGG