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Detailed information on CNT30354836


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675703Lactuca sativaSetaria viridis31.7265.1281.97183forward
CNT30640872Lactuca sativaNymphaea colorata28.7721.9382.53166forward
CNT30535924Lactuca sativaEucalyptus grandis29.8158.785.47172forward
CNT30377104Lactuca sativaArabidopsis thaliana50.9541.6482.31294forward
CNT30500604Lactuca sativaCoffea canephora22.1820.8185.16128forward
CNT30616482Lactuca sativaSesamum indicum44.3716.7983.98256forward
CNT30489027Lactuca sativaOlea europaea44.5474.2882.1257forward
CNT30506119Lactuca sativaNicotiana attenuata27.0439.183.97156forward
CNT3042435Lactuca sativaPrunus dulcis45.9338.2982.64265forward
CNT30400271Lactuca sativaTriticum turgidum49.7457.9881.53287forward
CNT30591858Lactuca sativaMusa acuminata57.1965.0980.3330forward
CNT30256659Lactuca sativaAvena sativa34.6627.9783200forward
CNT30312227Lactuca sativaCamelina sativa45.4162.0982.06262forward
CNT3062262Lactuca sativaArabidopsis lyrata55.2958.2180.25319forward
CNT3079663Lactuca sativaBrassica juncea50.9555.2680.61294forward
CNT30263629Lactuca sativaBrassica rapa34.3234.5582.83198forward
CNT30468674Lactuca sativaSaccharum spontaneum44.3727.9282.42256forward
CNT30205421Lactuca sativaHelianthus annuus66.972.4284.72386forward
CNT30713436Lactuca sativaMalus domestica golden29.4652.885.29170forward
CNT30687113Lactuca sativaTriticum urartu45.0648.8781.15260forward
CNT30476941Lactuca sativaArabidopsis halleri55.2939.8380.88319forward
CNT30370935Lactuca sativaOryza glumipatula44.8926.7680.69259forward
CNT30154777Lactuca sativaPrunus persica45.9333.1282.64265forward
CNT3028162Lactuca sativaTheobroma cacao36.7437.7982.08212forward
CNT3035176Lactuca sativaCucumis melo52.8655.4581.64305forward
CNT30330867Lactuca sativaDioscorea rotundata53.943.0281.35311forward
CNT30335475Lactuca sativaCynara cardunculus68.2830.3384.26394forward
CNT3049385Lactuca sativaCucumis sativus38.327.984.16221forward

Expression of CNT30354836

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MVMLGCRKERSGCKRVRLGCRRVRLGCRMVMSGCKPERSGCKLAM*

Sequence

>CNT30354836
ATTGGTACCTGTAGTTGGGGGATGTAGGGCTGTATGGACTACTAGGAGAATAAGCCAACGAGGGGCTGTACTTAGCGGATGAAGGGTTGTAACTTGGTGA
GGTGGGACTGTAACTTGGAGAAGTAGGACTGTAGCTTGGGGAAGTAGGACTGTACCCAGGTGAAGTTGGGCTGTAAGCAGGGGAGGTTGGGCTGTAGGAA
GGGGAGGTCGGGCTGTAGGATGGTGATGTTGGGCTGTAGGAAGGAGAGGTCGGGCTGTAAGAGGGTGAGGTTGGGCTGTAGGAGGGTGAGGTTGGGCTGT
AGGATGGTGATGTCGGGCTGTAAGCCGGAGAGGTCGGGCTGTAAGCTGGCGATGTAGGGCTGTAGCTAGGTGATGTGGGTGAGTAGCTTGGTGAGGTAGG
GGAGTAGCTAGGTGAAGTGGGTGAGTAGGTAGGACTTGTTGGGCTATAACCGGGTGAACTTGGGCTGTAAGTTGGAGAGGTGGGACTGTAACCCGGAGAT
GTAGGGCTATAGCCCGGTGAGGTTGGGCTATAACCAGGCGAGGTGGGGCTGTATCCCGGAGATGATGGGCTGTACCC