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Detailed information on CNT30625547


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523536Daucus carotaSetaria italica25.1446.1980.08261forward
CNT30536082Daucus carotaEucalyptus grandis30.8354.0580320forward
CNT30549269Daucus carotaIpomoea triloba23.4145.1782.3243forward
CNT30700805Daucus carotaQuercus lobata21.2972.9480.54221forward
CNT30376158Daucus carotaArabidopsis thaliana31.636.6979.27328forward
CNT30727661Daucus carotaCorchorus capsularis22.7437.781.78236forward
CNT30489027Daucus carotaOlea europaea14.3543.0683.89149forward
CNT30506121Daucus carotaNicotiana attenuata17.2443.2484.92179forward
CNT30710467Daucus carotaGlycine max17.9225.7383.33186forward
CNT30508941Daucus carotaSolanum lycopersicum21.6856.6881.78225forward
CNT3062262Daucus carotaArabidopsis lyrata29.8756.5778.39310forward
CNT3079663Daucus carotaBrassica juncea31.1260.7179.88323forward
CNT30263848Daucus carotaBrassica rapa27.0766.4380.43281forward
CNT3016767Daucus carotaZea mays25.0534.3980.77260forward
CNT30605857Daucus carotaGossypium raimondii30.8339.4680320forward
CNT30216750Daucus carotaKalanchoe fedtschenkoi28.326080.95294forward
CNT30205386Daucus carotaHelianthus annuus27.6540.1481.88287forward
CNT3027877Daucus carotaTheobroma cacao22.7459.7581.78236forward

Expression of CNT30625547

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MIWGARDWRPGWSHAKVQTVHVTRKLNVNSLFQHLLI*

>peptide 2 (67 aa)
MMEKLDCRMGRLGCRTGSSGCRTERSGCRMERWGCRTERWGCKQVRWGCRQVRWGCSLGRWGCSWGR*

>peptide 3 (34 aa)
MSDCTGWMVIVLDCSGNMPGRGCTLQMKGCSLEM*

>peptide 4 (35 aa)
MLVSWGYNQVKRGYNLEKMQEKIPCHQHREKIVHQ*

Sequence

>CNT30625547
AATTCATCACATAGAACACTTCTAAACAGGAAAATTAAACATTCGGGAAATAAAAGTGTCATCTCTTGCCTGTAACTGGGGGATGTCGGACTGTACGGGC
TGGATGGTGATAGTCTTGGACTGCTCGGGGAATATGCCAGGGAGGGGCTGTACTTTGCAGATGAAGGGTTGTAGCTTGGAGATGTAGGACTATAGCTTGG
AGATGTGGGACTGTAGCTCGGCGATGTGGGACTGTATGCAGGAGAAGTAGGACTATATGATGGAGAAGTTGGACTGTAGGATGGGGAGGTTGGGCTGTAG
GACGGGGAGCTCGGGCTGTAGGACGGAGAGGTCGGGCTGTAGGATGGAGAGGTGGGGCTGTAGGACGGAGAGGTGGGGCTGTAAGCAGGTGAGGTGGGGC
TGTAGGCAGGTGAGGTGGGGCTGTAGCTTGGGGAGGTGGGGCTGTAGCTGGGGGAGGTAGGGGAGTAGGATGGACTTGTCGGTGAATATGTAGGGCTACT
AGGACTATATCCTGGAGAGCTTGGACTATATGTTGGTGAGCTGGGGCTATAACCAGGTGAAGAGGGGCTATAACTTGGAGAAGATGCAGGAGAAAATCCC
ATGCCACCAACATAGGGAGAAAATTGTGCATCAGTAATGGGTGACAGCCGAAGGTTTGGGCTTAGCATGTAGTTTGGTGACATCATTCCATCATGATATG
GGGTGCCCGAGATTGGCGACCGGGCTGGAGTCATGCCAAAGTCCAGACCGTCCATGTAACTAGGAAGCTGAATGTCAATAGCTTGTTTCAACATCTTCTC
ATTTAAATACAAAGAACAGTCTCCAGTGCCAATTGGTGCCAGTTGACCCAACATGATATTTTCAGTAACACCTCTCAGGTAATCTGTTTCTGCATAAACT
GCAGCATCAAGGAGAATGTCAACTGTTTCCTCAAATGAACATCTCATCATTGGACCTGTGTCATTCCTATTAATTCCATGACGAGTGATGGCCATCAGGT
GACCACGGTATGTCATGGTATCGCAGAGGATAGCCAAG