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Detailed information on CNT30727661


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000067, E-value = 1e-41

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640872Corchorus capsularisNymphaea colorata81.3167.2480.75509forward
CNT30315993Corchorus capsularisCorylus avellana80.0349.9581.84501forward
CNT30549101Corchorus capsularisIpomoea triloba61.6665.4280.31386forward
CNT30376158Corchorus capsularisArabidopsis thaliana89.9462.9881.88563forward
CNT30500730Corchorus capsularisCoffea canephora90.2665.3978.76565forward
CNT30616511Corchorus capsularisSesamum indicum67.8965.0882.12425forward
CNT30269286Corchorus capsularisChenopodium quinoa75.0871.5479.36470forward
CNT3021339Corchorus capsularisCitrullus lanatus84.0382.9781.75526forward
CNT30524942Corchorus capsularisPhaseolus vulgaris96.1789.7278.24602forward
CNT30628702Corchorus capsularisVigna unguiculata68.5362.6379.49429forward
CNT30490956Corchorus capsularisOlea europaea42.6563.5782.02267forward
CNT30506120Corchorus capsularisNicotiana attenuata75.0880.3478.09470forward
CNT30710435Corchorus capsularisGlycine max73.1679.3878.82458forward
CNT3042435Corchorus capsularisPrunus dulcis91.8583.0982.96575forward
CNT3091337Corchorus capsularisSolanum tuberosum73.9656.7478.19463forward
CNT30307041Corchorus capsularisTriticum aestivum39.1445.7180.82245forward
CNT30400271Corchorus capsularisTriticum turgidum39.1449.4980.82245forward
CNT30559890Corchorus capsularisActinidia chinensis88.581.1182.31554forward
CNT3087851Corchorus capsularisVigna radiata66.6145.6280.82417forward
CNT30234460Corchorus capsularisBrassica oleracea89.4679.6680.36560forward
CNT30508904Corchorus capsularisSolanum lycopersicum87.788.8378.69549forward
CNT30311656Corchorus capsularisCamelina sativa77.4887.3982.27485forward
CNT3062262Corchorus capsularisArabidopsis lyrata77.6488.6981.28486forward
CNT3079663Corchorus capsularisBrassica juncea75.0888.3581.7470forward
CNT30263540Corchorus capsularisBrassica rapa67.8965.8981.18425forward
CNT3016767Corchorus capsularisZea mays64.2253.1779.6402forward
CNT30607743Corchorus capsularisGossypium raimondii10092.7487.06626forward
CNT30216750Corchorus capsularisKalanchoe fedtschenkoi59.7476.3380.21374forward
CNT3067990Corchorus capsularisLeersia perrieri41.0567.4582.88257forward
CNT30648676Corchorus capsularisRosa chinensis90.2675.8480565forward
CNT30625547Corchorus capsularisDaucus carota45.8527.6581.53287forward
CNT30687113Corchorus capsularisTriticum urartu38.1844.9280.75239forward
CNT30350932Corchorus capsularisEragrostis tef53.0474.2781.02332forward
CNT30476941Corchorus capsularisArabidopsis halleri89.9470.2981.53563forward
CNT30366857Corchorus capsularisSorghum bicolor63.5840.5379.15398forward
CNT30596736Corchorus capsularisOryza meridionalis37.731.2682.63236forward
CNT30355018Corchorus capsularisLactuca sativa77.4882.3477.73485forward
CNT30370935Corchorus capsularisOryza glumipatula51.633.3782.97323forward
CNT30154742Corchorus capsularisPrunus persica96.1771.7582.72602forward
CNT30408809Corchorus capsularisPapaver somniferum84.6661.3479.06530forward
CNT30573870Corchorus capsularisVitis vinifera89.4679.4381.25560forward
CNT30705859Corchorus capsularisPrunus avium76.6864.2682.5480forward
CNT30642025Corchorus capsularisCannabis sativa63.5877.5884.17398forward
CNT3027877Corchorus capsularisTheobroma cacao58.7993.1693.21368forward
CNT3051702Corchorus capsularisAmborella trichopoda94.8997.0677.78594forward
CNT3035176Corchorus capsularisCucumis melo81.4792.7379.8510forward
CNT30330871Corchorus capsularisDioscorea rotundata41.3735.8282.63259forward
CNT30149777Corchorus capsularisBrachypodium distachyon48.8833.2282.35306forward
CNT30103220Corchorus capsularisOryza rufipogon48.2432.5183.11302forward
CNT30584450Corchorus capsularisEchinochloa crusgalli71.2559.5579.82446forward
CNT30497833Corchorus capsularisDigitaria exilis56.3940.0281.3353forward
CNT30176441Corchorus capsularisVigna angularis94.2597.5279.15590forward
CNT30558075Corchorus capsularisPanicum hallii47.7637.981.94299forward
CNT30551544Corchorus capsularisOryza brachyantha36.2632.6683.26227forward
CNT3049385Corchorus capsularisCucumis sativus70.1355.4382.23439forward

Expression of CNT30727661

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MLDCMMGMLGCMMEKWDYRQVKLGCMQVKLDYSSERWDCNLGKWDCNLGM*

Sequence

>CNT30727661
AGGAGACAACCTGGGACTGCTTGGTGAGTATGCAAGAGACGGACTATACTTGGCAGACTGTGGATTGTAACTTGGAGAGGTAGGACTATAGCTTGGCGAT
GTCGGACTATAACTTGGTGAGGTTGGACTGTACCCTGGAGAAGTGGGGCTATAGGCTGGAGAAGTAGGACTGTATGATGGAGACGTAGGGCTATAGGAGG
GTGAGGTCGGGCTGTAAGAAGGAGATGTTGGACTGTATGATGGGGATGTTGGGCTGTATGATGGAGAAGTGGGACTATAGGCAGGTGAAGTTGGGCTGTA
TGCAGGTGAAGTTGGACTATAGCTCGGAGAGGTGGGACTGTAACTTGGGGAAGTGGGACTGTAACTTGGGGATGTAGGGCTGTAACTTGGCGATGTAGGG
CTGTAGCTTGGAGAGGTCGGAGAATAAGATGGACTAGTAGGAGAATAGGCTGGACTTGTTGGACTGTAACCTGGTGAACTTGGACTGTAAGTAGGTGATG
TGGGGCTGTACCCAGGAGATGTGGGGCTATATCCAGGAGATGTAGGACTGTAACCAGGCGAGGTTGGACTGTAGCCAGGGGATGATGGACTGTATCCAGG
AGAAGATGGGCTGTAACCTGGGGATG