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Detailed information on CNT30554779


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675703Oryza glaberrimaSetaria viridis26.3187.5481.71246forward
CNT30523577Oryza glaberrimaSetaria italica30.846.5382.99288forward
CNT30376704Oryza glaberrimaArabidopsis thaliana34.3340.7481321forward
CNT30628927Oryza glaberrimaVigna unguiculata33.2655.5480.71311forward
CNT30591858Oryza glaberrimaMusa acuminata42.3578.1179.29396forward
CNT3062262Oryza glaberrimaArabidopsis lyrata34.3358.5881.93321forward
CNT30468644Oryza glaberrimaSaccharum spontaneum68.7768.3382.43643forward
CNT30366537Oryza glaberrimaSorghum bicolor81.2887.1682.76760forward
CNT30370935Oryza glaberrimaOryza glumipatula105.78102.1790.9989forward
CNT3028162Oryza glaberrimaTheobroma cacao24.9241.5383.26233forward
CNT30584421Oryza glaberrimaEchinochloa crusgalli75.5187.5981.3706forward

Expression of CNT30554779

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MIWCPRDGRACWCHAKVQAFNIAWELKFDGLLQHLIIEIQCTASCTDRCKL

>peptide 2 (42 aa)
CNLVKSDYKGSALGCLESTRGKDCTWPKKDCSLVKLDCNLVM*

>peptide 3 (35 aa)
MVSQRWASVLVSCQSPGLQHSLGVEVRWPAAASDH*

>peptide 4 (37 aa)
MMEKWDCSWVKQDYMMEKLGCILALDCIPEKMDCNHP*

>peptide 5 (88 aa)
MQEMSDCMRVMSDCMRGKWGCKTEMLDCMMEMLGYMMVMWGCKMVMWGYKMEKLDYMQEKSDYKLVMSDCSSEKWDYNLARSGCNLEM*

Sequence

>CNT30554779
CTGTAATTTGGTGAAGTCTGACTATAAGGGCTCAGCCTTGGGCTGCTTGGAGAGTACGCGTGGGAAGGACTGTACTTGGCCGAAGAAGGATTGTAGCTTG
GTGAAGTTGGACTGTAATTTGGTGATGTAGGGCTGTATGCAGGAGATGTCGGACTGTATGAGGGTGATGTCGGACTGTATGAGGGGGAAGTGGGGCTGTA
AGACGGAGATGTTGGACTGTATGATGGAGATGTTGGGCTATATGATGGTGATGTGGGGCTGTAAGATGGTGATGTGGGGCTATAAGATGGAGAAGTTGGA
CTATATGCAGGAGAAGTCGGACTATAAACTGGTGATGTCGGACTGTAGCTCGGAGAAGTGGGACTATAACTTGGCGAGGTCGGGCTGTAACTTGGAGATG
TAGGGCTATAGCTAGGTGATGTAGGGCTGTAGCTTGGAGATGTTGGCGAGTATGATGGACTGGTAGGCGAGTATGACGGACTGGTAGGTGAGTATGATGG
ACTTGTTGGCGAGTAAGTAGGAGAGCCAGGTGTATATGATGGAGAAGTGGGACTGTAGCTGGGTGAAGCAGGACTATATGATGGAGAAGTTGGGCTGTAT
CCTGGCCCTGGACTGTATACCGGAGAAGATGGACTGTAACCACCCCTGACGATGGAGTGTAGCCTGGTGAAGGTACTGGTGAGAAAGCCATTCCTCCAAC
ATATGGCGAGAACTGAGCATCTGTAATGGGGGAAGCCCTGATGTTTGGACTTAGCAGGTAGCTCGGTGACATCATTCCTTCATGATATGGTGTCCCAGAG
ATGGGCGAGCGTGCTGGTGTCATGCCAAAGTCCAGGCCTTCAACATAGCTTGGGAGTTGAAGTTCGATGGCCTGCTGCAGCATCTGATCATTGAGATACA
ATGCACAGCCTCCTGTACCGATAGGTGCAAGCTGG