« Back to Manihot esculenta search


Detailed information on CNT30378927


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT000794, E-value = 3e-51

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640872Manihot esculentaNymphaea colorata52.1842.6782.97323forward
CNT30536082Manihot esculentaEucalyptus grandis93.8698.1484.34581forward
CNT30315993Manihot esculentaCorylus avellana79.6449.1580.12493forward
CNT30516792Manihot esculentaJuglans regia92.4164.2782.17572forward
CNT30700805Manihot esculentaQuercus lobata32.796787.19203forward
CNT30376525Manihot esculentaArabidopsis thaliana59.4548.180.71368forward
CNT30267761Manihot esculentaChenopodium quinoa49.7637.7580.84308forward
CNT3021339Manihot esculentaCitrullus lanatus94.9992.7478.74588forward
CNT30727660Manihot esculentaCorchorus capsularis76.4186.4782.45473forward
CNT30403782Manihot esculentaBeta vulgaris46.3768.6681.18287forward
CNT30524942Manihot esculentaPhaseolus vulgaris58.4853.9580.11362forward
CNT30628902Manihot esculentaVigna unguiculata65.4391.4281.48405forward
CNT30506120Manihot esculentaNicotiana attenuata87.0892.1479.78539forward
CNT3042435Manihot esculentaPrunus dulcis64.7857.9582.79401forward
CNT3091361Manihot esculentaSolanum tuberosum54.1245.5882.69335forward
CNT30308418Manihot esculentaTriticum aestivum32.7928.1681.77203forward
CNT30398985Manihot esculentaTriticum turgidum32.7931.4282.27203forward
CNT30591924Manihot esculentaMusa acuminata81.7494.9381.62506forward
CNT30508722Manihot esculentaSolanum lycopersicum54.1265.381.79335forward
CNT30145737Manihot esculentaMedicago truncatula60.4260.7180.75374forward
CNT30256655Manihot esculentaAvena sativa30.3741.8782.45188forward
CNT30311656Manihot esculentaCamelina sativa69.1477.1280.14428forward
CNT3062262Manihot esculentaArabidopsis lyrata59.9467.780.59371forward
CNT30140910Manihot esculentaLolium perenne43.9476.1980.51272forward
CNT30216750Manihot esculentaKalanchoe fedtschenkoi54.668.9878.99338forward
CNT3067990Manihot esculentaLeersia perrieri40.0665.0981.85248forward
CNT30205370Manihot esculentaHelianthus annuus31.8330.1784.77197forward
CNT30350937Manihot esculentaEragrostis tef46.8552.4481.38290forward
CNT30596736Manihot esculentaOryza meridionalis34.7328.4883.26215forward
CNT30154777Manihot esculentaPrunus persica67.6952.3883.29419forward
CNT30408809Manihot esculentaPapaver somniferum94.3567.5979.11584forward
CNT30573855Manihot esculentaVitis vinifera87.2489.781.67540forward
CNT3027877Manihot esculentaTheobroma cacao54.1284.8184.48335forward
CNT3051605Manihot esculentaAmborella trichopoda98.0691.5579.41607forward
CNT30121049Manihot esculentaCitrus clementina95.854.8184.32593forward
CNT3035160Manihot esculentaCucumis melo68.6684.3380.94425forward
CNT30103220Manihot esculentaOryza rufipogon51.734.4580.62320forward
CNT30584450Manihot esculentaEchinochloa crusgalli54.2844.8680.06336forward
CNT30498009Manihot esculentaDigitaria exilis52.1832.9981.11323forward
CNT30176441Manihot esculentaVigna angularis65.7567.2779.85407forward
CNT30335475Manihot esculentaCynara cardunculus56.3826.8779.94349forward

Expression of CNT30378927

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MLGYSLVRLDCNQGMSGYKQVKLDCMMEMWGCKKARLGYRKEKLGCMMVR*

Sequence

>CNT30378927
TGGGGCTGTAAGGACTCGACGGTGACAATCTTGGACTGCTAGGTGAGTATGCCAGTGACGGACTGTATTTAGCTGACTGAGGATTGTAACTGGGTGAGGT
CGGGCTATAGCTTGGCGATGTTGGGCTATAGCTTGGTGAGGTTGGACTGTAACCAGGGGATGTCGGGCTATAAGCAGGTGAAGTTGGACTGTATGATGGA
GATGTGGGGCTGTAAGAAGGCGAGGTTGGGCTATAGGAAGGAGAAGTTGGGCTGTATGATGGTGAGGTAGGACTGTATGCAGGCGAAGTGGGACTATATG
CAGGTGAAGTGGGACTATATACTGGAGATGTAGGGCTATAGCTTGGTGAAGTTGGGCTGTAACTGGGAGATGTGGGGCTATAGCTTGGAGAGGTTGGACT
ATAACTTGGAGATGTTGGGCTATAGCTGGGAGAAGTTGGGCTGTAACTAGGGGAAGTTGGGGAATACGATGGACTTGTAGGAGAATAGGCAGGACTGGTA
GGGCTATAGCCAGGAGAACTAGGGCTATAAGTTGGCGAAGTTGGGCTGTATCCAGGTGAGGTGGGGCTATAACCAGGTGAGGTAGGGCTGTATCCAGGAG
ACGTAGGACTGTAACCAGG