« Back to Dioscorea rotundata search


Detailed information on CNT30330867


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000067, E-value = 2e-15

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523536Dioscorea rotundataSetaria italica37.2147.6182.9269forward
CNT30536082Dioscorea rotundataEucalyptus grandis40.1148.9980.34290forward
CNT30315800Dioscorea rotundataCorylus avellana54.6385.8778.73395forward
CNT30549101Dioscorea rotundataIpomoea triloba71.6587.879.15518forward
CNT30516897Dioscorea rotundataJuglans regia76.962.980.22556forward
CNT30700558Dioscorea rotundataQuercus lobata36.3897.4182.89263forward
CNT30377104Dioscorea rotundataArabidopsis thaliana30.0130.7483.41217forward
CNT30616482Dioscorea rotundataSesamum indicum37.0717.5783.96268forward
CNT30267761Dioscorea rotundataChenopodium quinoa38.8734.4481.49281forward
CNT30403468Dioscorea rotundataBeta vulgaris39.1436.5683.04283forward
CNT30524942Dioscorea rotundataPhaseolus vulgaris34.7237.4180.88251forward
CNT30628928Dioscorea rotundataVigna unguiculata48.1369.7479.02348forward
CNT30489004Dioscorea rotundataOlea europaea29.3234.5383.96212forward
CNT30506120Dioscorea rotundataNicotiana attenuata30.1537.2680.73218forward
CNT30708121Dioscorea rotundataGlycine max60.5865.9678.77438forward
CNT3091613Dioscorea rotundataSolanum tuberosum41.0839.2980.47297forward
CNT30307041Dioscorea rotundataTriticum aestivum26.8336.1984.02194forward
CNT30400472Dioscorea rotundataTriticum turgidum40.1129.0981.72290forward
CNT3087851Dioscorea rotundataVigna radiata34.7227.4681.27251forward
CNT30235097Dioscorea rotundataBrassica oleracea63.3557.1879.04458forward
CNT30508793Dioscorea rotundataSolanum lycopersicum18.1233.9486.26131forward
CNT30145737Dioscorea rotundataMedicago truncatula34.7240.7581.67251forward
CNT30442780Dioscorea rotundataAegilops tauschii24.922.783.89180forward
CNT30256659Dioscorea rotundataAvena sativa40.6641.1279.93294forward
CNT30312227Dioscorea rotundataCamelina sativa36.2462.0981.3262forward
CNT3062262Dioscorea rotundataArabidopsis lyrata45.3759.8579.27328forward
CNT3076593Dioscorea rotundataBrassica juncea35.4146.8981.25256forward
CNT30263848Dioscorea rotundataBrassica rapa30.9852.9680.8224forward
CNT30468525Dioscorea rotundataSaccharum spontaneum40.5334.7682.25293forward
CNT30140910Dioscorea rotundataLolium perenne42.1985.4380305forward
CNT3017802Dioscorea rotundataZea mays36.3867.6181.75263forward
CNT30605857Dioscorea rotundataGossypium raimondii41.7737.2480.79302forward
CNT30216750Dioscorea rotundataKalanchoe fedtschenkoi35.5552.4580.16257forward
CNT3067979Dioscorea rotundataLeersia perrieri34.7269.7281.27251forward
CNT30205370Dioscorea rotundataHelianthus annuus37.6241.6581.62272forward
CNT30625385Dioscorea rotundataDaucus carota70.450.5578.98509forward
CNT30688581Dioscorea rotundataTriticum urartu23.6529.4384.8171forward
CNT30341749Dioscorea rotundataEragrostis tef37.961.5782.85274forward
CNT30366979Dioscorea rotundataSorghum bicolor39.2846.4880.63284forward
CNT30620207Dioscorea rotundataCajanus cajan46.0615.579.28333forward
CNT30354836Dioscorea rotundataLactuca sativa43.0253.981.35311forward
CNT30154777Dioscorea rotundataPrunus persica75.5268.2579.49546forward
CNT30408809Dioscorea rotundataPapaver somniferum46.3338.7783.88335forward
CNT30573979Dioscorea rotundataVitis vinifera35.5544.0883.27257forward
CNT3028162Dioscorea rotundataTheobroma cacao31.814182.17230forward
CNT30150463Dioscorea rotundataBrachypodium distachyon47.9939.4880.69347forward
CNT30584594Dioscorea rotundataEchinochloa crusgalli35.9642.0783.08260forward
CNT30497905Dioscorea rotundataDigitaria exilis40.1132.1284.48290forward
CNT30558075Dioscorea rotundataPanicum hallii37.6234.4781.99272forward
CNT30551544Dioscorea rotundataOryza brachyantha47.7249.6480.87345forward
CNT30335475Dioscorea rotundataCynara cardunculus26.4214.784.29191forward

Expression of CNT30330867

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MLGYNQERLDCIPERMGCIQEMMDCILGMRWERSPSHQHMEKTEHL*

>peptide 2 (46 aa)
MMVRSGCTMVRSGCMKVRSGCMMGMLGCMLVRLGYTPGMWDCKLGK*

Sequence

>CNT30330867
GAAGGAGATATCCTTGGACTGCTAGGAGAGTATGCAATTGAAGGGCTGTATTTAGCTGAAGGAGGATTGTAACTTGGAGATGTAGGGCTATAACTGGGAG
ATGTGGGGCTGTAGCTGGGTGATGTGGGACTATACCCAGGAGAGGTAGGACTGTAGGCAGGCGATGTAGGGCTATAAGAAGGCGAGGTCGGGCTGTATGA
TGGTGAGGTCGGGCTGTACGATGGTGAGGTCGGGCTGTATGAAGGTGAGGTCGGGCTGTATGATGGGGATGTTGGGCTGTATGCTGGTGAGGTTGGGCTA
TACACCGGGGATGTGGGACTGTAAACTGGGGAAGTAGGACTGTAGCTAGGTGAAGTTGGGGAGTAAGATGGGCTGGTTGGAGAATAGGCAGGACTTGTTG
GACTATAACCAGGAGAGCTAGGACTGTATGTTGGCGATGTAGGACTGTAGCCAGGGGATGTTGGGCTATAACCAGGAGAGGTTGGACTGTATCCCGGAGA
GGATGGGCTGTATCCAGGAGATGATGGACTGTATCCTGGGGATGAGGTGGGAGAGAAGCCCATCCCACCAACATATGGAGAAAACTGAGCATCTGTAATG
GGTGAAGAGCGAGCATTTGGACTAAGGAGATAGCTGGGAGACATCATTCCCTCATGATATGGCGTCCCTGAGACAGGTGAACGAGATGGTGTCATGCCAA
AGTCCAATCCCTCCATGTAACTA