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Detailed information on CNT30559890


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640872Actinidia chinensisNymphaea colorata76.4368.9681.23522forward
CNT30536082Actinidia chinensisEucalyptus grandis43.9250.6882.33300forward
CNT30315993Actinidia chinensisCorylus avellana71.8948.9582.89491forward
CNT30516792Actinidia chinensisJuglans regia50.8138.9985.3347forward
CNT30376379Actinidia chinensisArabidopsis thaliana76.1369.8981.92520forward
CNT30500730Actinidia chinensisCoffea canephora47.7337.7380.67326forward
CNT30269243Actinidia chinensisChenopodium quinoa89.967.479.8614forward
CNT3021339Actinidia chinensisCitrullus lanatus51.6855.6883353forward
CNT30727661Actinidia chinensisCorchorus capsularis81.1188.582.31554forward
CNT30378908Actinidia chinensisManihot esculenta48.1734.8582.37329forward
CNT30403468Actinidia chinensisBeta vulgaris57.8351.0381.01395forward
CNT30524942Actinidia chinensisPhaseolus vulgaris47.7348.5881.29326forward
CNT30628902Actinidia chinensisVigna unguiculata31.4848.5384.65215forward
CNT30195835Actinidia chinensisPisum sativum34.9994.0984.1239forward
CNT30506120Actinidia chinensisNicotiana attenuata5361.8880.94362forward
CNT3042435Actinidia chinensisPrunus dulcis84.4883.3880.42577forward
CNT3091613Actinidia chinensisSolanum tuberosum54.3249.0784.1371forward
CNT30400271Actinidia chinensisTriticum turgidum59.5982.2279.36407forward
CNT3087851Actinidia chinensisVigna radiata30.622.8785.17209forward
CNT30234460Actinidia chinensisBrassica oleracea72.6270.5581.85496forward
CNT30508904Actinidia chinensisSolanum lycopersicum71.4578.9682.58488forward
CNT30554721Actinidia chinensisOryza glaberrima50.5136.980.87345forward
CNT30145737Actinidia chinensisMedicago truncatula44.2249.0382.12302forward
CNT30256659Actinidia chinensisAvena sativa41.1439.380.78281forward
CNT30311656Actinidia chinensisCamelina sativa5972.6181.89403forward
CNT3062262Actinidia chinensisArabidopsis lyrata5973.5481.89403forward
CNT3076593Actinidia chinensisBrassica juncea68.5285.7180.56468forward
CNT30263459Actinidia chinensisBrassica rapa55.9370.6180.89382forward
CNT30468540Actinidia chinensisSaccharum spontaneum56.5244.5780.31386forward
CNT30141877Actinidia chinensisLolium perenne27.0941.2984.86185forward
CNT3017147Actinidia chinensisZea mays64.8661.9681.26443forward
CNT30607743Actinidia chinensisGossypium raimondii80.5381.4881.82550forward
CNT3067979Actinidia chinensisLeersia perrieri47.7390.5682.52326forward
CNT30205386Actinidia chinensisHelianthus annuus51.8349.5180.23354forward
CNT30713436Actinidia chinensisMalus domestica golden27.9659.3283.77191forward
CNT30625810Actinidia chinensisDaucus carota69.8470.3581.13477forward
CNT30350932Actinidia chinensisEragrostis tef47.7372.9382.21326forward
CNT30476914Actinidia chinensisArabidopsis halleri72.1888.0481.34493forward
CNT30620243Actinidia chinensisCajanus cajan34.8571.6983.19238forward
CNT30596736Actinidia chinensisOryza meridionalis34.9931.6683.26239forward
CNT30354623Actinidia chinensisLactuca sativa38.5141.0382.89263forward
CNT30370935Actinidia chinensisOryza glumipatula36.3125.6282.66248forward
CNT30154742Actinidia chinensisPrunus persica84.4868.7780.24577forward
CNT30408809Actinidia chinensisPapaver somniferum87.769.3380.63599forward
CNT30573870Actinidia chinensisVitis vinifera82.1479.5783.96561forward
CNT30642027Actinidia chinensisCannabis sativa64.8669.4480.59443forward
CNT3027877Actinidia chinensisTheobroma cacao43.0574.4383.33294forward
CNT3051702Actinidia chinensisAmborella trichopoda77.0185.9579.85526forward
CNT30109704Actinidia chinensisOryza longistaminata32.0639.3982.19219forward
CNT30121049Actinidia chinensisCitrus clementina87.5555.2779.77598forward
CNT3035176Actinidia chinensisCucumis melo56.9570.7383.8389forward
CNT30150463Actinidia chinensisBrachypodium distachyon56.9544.2580.46389forward
CNT30103220Actinidia chinensisOryza rufipogon55.9341.1281.15382forward
CNT30584594Actinidia chinensisEchinochloa crusgalli61.7968.2881.99422forward
CNT30497905Actinidia chinensisDigitaria exilis58.2744.0881.16398forward
CNT30176441Actinidia chinensisVigna angularis57.9865.4580.56396forward
CNT30551544Actinidia chinensisOryza brachyantha51.6850.7982.44353forward
CNT30335475Actinidia chinensisCynara cardunculus77.1640.5779.51527forward
CNT3049385Actinidia chinensisCucumis sativus68.9659.4782.59471forward

Expression of CNT30559890

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MEKLGCKMVKLGCKMAKWGCMQEKWGYMQVKWGCKLGKWDCSLGKWGCN*

>peptide 2 (35 aa)
GMLDCMDLMATFLDCSVNKQGMGCILLKKDCNSEM*

>peptide 3 (29 aa)
MLDCSLETLDCSLEMLDCNQEKLGYRQGR*

Sequence

>CNT30559890
GGGATGTTGGACTGTATGGACTTGATGGCGACATTCTTGGACTGCTCGGTGAATAAGCAAGGGATGGGCTGTATTTTGCTGAAGAAGGATTGTAACTCGG
AGATGTAGGACTGTAGCTCGGAGATGTTGGACTGTAGCTTGGAGACGTTGGACTGTAGCTTGGAGATGTTGGACTGTAACCAGGAGAAGTTGGGCTATAG
GCAGGGGAGGTAGGGCTATACGAGGGAGAAGTTGGACTATAAGAGGGTGAGGTTGGGCTGTAGGATGGAGAAGTTGGGCTGTAAGATGGTGAAGTTGGGC
TGTAAGATGGCGAAGTGGGGCTGTATGCAGGAGAAGTGGGGCTATATGCAGGTGAAGTGGGGCTGTAAGCTGGGGAAGTGGGACTGTAGCTTGGGGAAGT
GGGGCTGTAACTAGGAGAAGTGGGGCTGTAGCTGGGGGATGTAGGACTATAACTGGGGGATGTGGGCGAGTAAGAAGGACTTGTAGGAGAATACGTAGGG
CTAGTTGGACTATACCCTGGTGAGCTTGGACTATATGTCGGGGACGTCGGGCTGTAACCAGGTGATGTTGGGCTATATCCAGGAGAAGTTGGGCTATAAC
CAGGAGAGGTAGGACTATATCCAGGAGACGACGGACTATATCCAGGAGAAGAGGGGCTGTAACCAGGGGATGATGCAGGAGAG