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Detailed information on CNT3017147


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT000794, E-value = 5e-41

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316118Zea maysCorylus avellana32.1732.2182.61230forward
CNT30549269Zea maysIpomoea triloba21.6828.8184.52155forward
CNT30376525Zea maysArabidopsis thaliana28.3926.5484.73203forward
CNT30616515Zea maysSesamum indicum31.3333.2382.14224forward
CNT30524942Zea maysPhaseolus vulgaris25.8727.5783.78185forward
CNT30628927Zea maysVigna unguiculata32.1741.0783.48230forward
CNT30195835Zea maysPisum sativum24.268.1183.82173forward
CNT30489068Zea maysOlea europaea31.0544.9480.18222forward
CNT30506120Zea maysNicotiana attenuata31.7538.882.38227forward
CNT30710529Zea maysGlycine max31.4739.8985.33225forward
CNT3042435Zea maysPrunus dulcis35.136.2782.07251forward
CNT3091192Zea maysSolanum tuberosum25.4526.2684.62182forward
CNT30308418Zea maysTriticum aestivum29.2328.9984.21209forward
CNT30559890Zea maysActinidia chinensis32.5934.1181.12233forward
CNT30508904Zea maysSolanum lycopersicum29.6534.383.02212forward
CNT30554580Zea maysOryza glaberrima58.4661.4780.38418forward
CNT30145737Zea maysMedicago truncatula24.228.0884.39173forward
CNT3062262Zea maysArabidopsis lyrata28.3937.0485.22203forward
CNT30216750Zea maysKalanchoe fedtschenkoi22.5232.8682.61161forward
CNT30625277Zea maysDaucus carota17.6220.5280.95126forward
CNT30688581Zea maysTriticum urartu26.7132.8784.82191forward
CNT30476941Zea maysArabidopsis halleri28.3925.3484.73203forward
CNT30620243Zea maysCajanus cajan24.252.1183.82173forward
CNT30596736Zea maysOryza meridionalis68.8165.1779.47492forward
CNT30355225Zea maysLactuca sativa25.8732.0682.16185forward
CNT30370935Zea maysOryza glumipatula20.2814.9884.14145forward
CNT3051546Zea maysAmborella trichopoda24.936.9382.58178forward
CNT3035160Zea maysCucumis melo29.2341.4781.34209forward
CNT30176441Zea maysVigna angularis32.5938.5184.98233forward
CNT30558075Zea maysPanicum hallii71.3364.6487.84510forward
CNT3049385Zea maysCucumis sativus32.1729.0480.87230forward

Expression of CNT3017147

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MGCIPLTMGSNHLVKGMVRMPCAQHTARTKHLY*

>peptide 2 (31 aa)
MVKLDCRMAMWGCKRVMWGCMLVRWGCSLVM*

Sequence

>CNT3017147
GTATGCATGTGAAGGGCTGTACTTGGCTGATGAAGGATTGTAGCTCGGAGATGTAGGACTGTAGCTCGGAGATGTAGGGCTGTAGCTCGGTGACGTTGGG
CTGTATCCTGGTGATGTCGGGCTGTAAGCAGGTGATGTCGGGCTGTAGGAGGGAGAGGTAGGGCTGTATGAGGGGGAGGTAGGGCTGTATGAAGGGGACG
TAGGGCTGTATGAAGGTGATGTAGGGCTATAAGATGGTGAAGTTGGACTGTAGGATGGCGATGTGGGGCTGTAAGCGGGTGATGTGGGGCTGTATGCTGG
TGAGGTGGGGCTGTAGCTTGGTGATGTAGGACTATAGCTAGGAGATGTAGGGCTGTAGCTTGGTGATGTAGGGCTGTAGCTTGGTGATGTTGGGCTGTAG
CTCGGAGATGTGGGTGAGTACGATGGGCTGGTAGGCGAGTACGTCGGGCTGGTTGGGGAGTAATTCGGGCTTGTTGGACTGTAGGTGGGAGAGCCAGGAG
TGTAAGACGGTGAGGTGGGACTATAGCTTGGTGATGCAGGGCTATATGATGGAGAGAGAGGGCTATATCCTTTCTCTGGGGTGAAAACCGGAGAAGATGG
GCTGTATCCCCCTGACGATGGGGAGTAACCACCTGGTGAAGGGAATGGTGAGAATGCCATGTGCCCAACATACGGCGAGAACGAAGCATCTGTATTAATA
GGCGAAGCCCTGATG