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Detailed information on CNT3079663


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523536Brassica junceaSetaria italica61.8458.2380.24329forward
CNT30536082Brassica junceaEucalyptus grandis77.2669.4380.05411forward
CNT30315993Brassica junceaCorylus avellana73.1238.7882.01389forward
CNT30376704Brassica junceaArabidopsis thaliana99.4467.1390.36529forward
CNT30616511Brassica junceaSesamum indicum7561.180.7399forward
CNT30727661Brassica junceaCorchorus capsularis88.3575.0881.7470forward
CNT30524932Brassica junceaPhaseolus vulgaris42.1147.7681.7224forward
CNT30506120Brassica junceaNicotiana attenuata51.6947.0180.36275forward
CNT30710467Brassica junceaGlycine max47.1834.7283.67251forward
CNT3091613Brassica junceaSolanum tuberosum65.7946.382350forward
CNT30591858Brassica junceaMusa acuminata67.8671.279.5361forward
CNT30145737Brassica junceaMedicago truncatula56.248.5481.94299forward
CNT30256659Brassica junceaAvena sativa5037.280.08266forward
CNT30311656Brassica junceaCamelina sativa99.2595.1487.88528forward
CNT3062262Brassica junceaArabidopsis lyrata95.4992.789.76508forward
CNT30468540Brassica junceaSaccharum spontaneum51.6931.7681.09275forward
CNT30141877Brassica junceaLolium perenne50.5660.0481.04269forward
CNT3016767Brassica junceaZea mays64.6645.581.69344forward
CNT30605857Brassica junceaGossypium raimondii74.2548.7182.03395forward
CNT30216750Brassica junceaKalanchoe fedtschenkoi40.9844.4982.11218forward
CNT3067990Brassica junceaLeersia perrieri47.1865.8880.88251forward
CNT30648253Brassica junceaRosa chinensis90.672.2680.5482forward
CNT30625547Brassica junceaDaucus carota70.336.0379.95374forward
CNT30688162Brassica junceaTriticum urartu57.3345.3982.3305forward
CNT30350932Brassica junceaEragrostis tef56.7767.5681.13302forward
CNT30366857Brassica junceaSorghum bicolor65.2335.3480.12347forward
CNT30596739Brassica junceaOryza meridionalis47.7439.0881.1254forward
CNT30354836Brassica junceaLactuca sativa55.2650.9580.61294forward
CNT30573855Brassica junceaVitis vinifera81.7772.2681.15435forward
CNT3027877Brassica junceaTheobroma cacao55.0874.1882.59293forward
CNT3051546Brassica junceaAmborella trichopoda33.6537.1483.24179forward
CNT30109704Brassica junceaOryza longistaminata37.0335.4382.23197forward
CNT30103004Brassica junceaOryza rufipogon47.7425.4882.68254forward
CNT30584450Brassica junceaEchinochloa crusgalli63.5345.1382.84338forward
CNT30498009Brassica junceaDigitaria exilis64.6635.1481.69344forward
CNT30176441Brassica junceaVigna angularis68.6160.3379.73365forward
CNT30551544Brassica junceaOryza brachyantha56.7743.4580.46302forward
CNT30114394Brassica junceaFicus carica34.7731.0982.7185forward
CNT30335477Brassica junceaCynara cardunculus37.0351.8481.73197forward

Expression of CNT3079663

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MSDCKTVKLDCKMERWGCMQVTLGCMQAKLDCNSGMLGCSSGMLDCS*

Sequence

>CNT3079663
CTGTAGTTTGGAGATGTAGGACTGTAAGGGCTAGCTGGTGATAGTCTTGCATTGCTGGGGGAGTAAGCCAGAGATGGACTGTATTTAGCAGACTGAGGGT
TGTAGCTTGGAGACGTCGGACCGTAACTAGGAGATGTCGGACTGTAGCTTGGTGAAGTAGGGCTGTAGCCAGGAGATGTAGGGCTGTATGCAGGTGAAGT
AGGACTGTAAGAAGGAGATGTTGGACTATAGGAGGGTGAAGTAGGGCTGTAAGAAGGCGATGTCGGACTGTAAGACGGTGAAGTTGGACTGTAAGATGGA
GAGGTGGGGCTGTATGCAGGTGACGTTGGGCTGTATGCAGGCGAAGTTGGACTGTAACTCGGGGATGTTGGGCTGTAGCTCGGGGATGTTGGACTGTAGC
TAGGAGACGTTGGGCTGTAGCTAGGAGACGTTGGGCTGTAGCTAGGGGAGGTAGGAGAATATGAAGGACTTGTTGGAGAATAAGCAGGGCTTGTTGGGCT
GTAGCCAGGAGAACTGGGACTGTACGTAGGAG