« Back to Nymphaea colorata search


Detailed information on CNT30640872


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000067, E-value = 1e-51

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523536Nymphaea colorataSetaria italica47.4263.5479.39359forward
CNT30536042Nymphaea colorataEucalyptus grandis59.7182.1879.65452forward
CNT30316118Nymphaea colorataCorylus avellana55.6158.9678.62421forward
CNT30549166Nymphaea colorataIpomoea triloba39.544.4980.6299forward
CNT30516792Nymphaea colorataJuglans regia60.551.4679.04458forward
CNT30700805Nymphaea colorataQuercus lobata31.1877.8980.93236forward
CNT30376379Nymphaea colorataArabidopsis thaliana68.4369.6281.08518forward
CNT30500604Nymphaea colorataCoffea canephora60.1173.9880.44455forward
CNT30616482Nymphaea colorataSesamum indicum54.8227.2180.24415forward
CNT30267761Nymphaea colorataChenopodium quinoa71.9966.7979.45545forward
CNT3021339Nymphaea colorataCitrullus lanatus59.7171.2982.52452forward
CNT30727661Nymphaea colorataCorchorus capsularis67.2481.3180.75509forward
CNT30378927Nymphaea colorataManihot esculenta42.6752.1882.97323forward
CNT30403407Nymphaea colorataBeta vulgaris23.6544.3182.12179forward
CNT30524942Nymphaea colorataPhaseolus vulgaris62.0970.0480.85470forward
CNT30628784Nymphaea colorataVigna unguiculata85.0784.6378.73644forward
CNT30489068Nymphaea colorataOlea europaea36.9956.6883.21280forward
CNT30506120Nymphaea colorataNicotiana attenuata41.8854.1979.81317forward
CNT30708216Nymphaea colorataGlycine max60.982.4780.48461forward
CNT3042435Nymphaea colorataPrunus dulcis79.1386.5681.8599forward
CNT3091701Nymphaea colorataSolanum tuberosum79.9279.6179.17605forward
CNT30559890Nymphaea colorataActinidia chinensis68.9676.4381.23522forward
CNT30591858Nymphaea colorataMusa acuminata40.6960.7581.82308forward
CNT3087851Nymphaea colorataVigna radiata62.0951.4280.64470forward
CNT30235097Nymphaea colorataBrassica oleracea68.8265.0482.15521forward
CNT30508722Nymphaea colorataSolanum lycopersicum55.7582.2679.38422forward
CNT30554634Nymphaea colorataOryza glaberrima67.1161.4379.13508forward
CNT30145737Nymphaea colorataMedicago truncatula29.5936.3681.25224forward
CNT30256659Nymphaea colorataAvena sativa22.7224.0682.56172forward
CNT30311670Nymphaea colorataCamelina sativa40.6955.983.12308forward
CNT3062262Nymphaea colorataArabidopsis lyrata42.2758.3981.56320forward
CNT3076593Nymphaea colorataBrassica juncea59.5882.681.37451forward
CNT30263459Nymphaea colorataBrassica rapa61.1685.5881.86463forward
CNT30468674Nymphaea colorataSaccharum spontaneum37.1230.6480.07281forward
CNT30607989Nymphaea colorataGossypium raimondii88.6496.1380.33671forward
CNT30216752Nymphaea colorataKalanchoe fedtschenkoi25.2341.2584.29191forward
CNT3067990Nymphaea colorataLeersia perrieri29.5958.7982.14224forward
CNT30648676Nymphaea colorataRosa chinensis43.7344.4382.48331forward
CNT30205103Nymphaea colorataHelianthus annuus22.8524.4482.08173forward
CNT30350933Nymphaea colorataEragrostis tef39.538.1982.27299forward
CNT30476914Nymphaea colorataArabidopsis halleri65.2688.2181.17494forward
CNT30366570Nymphaea colorataSorghum bicolor46.958.0179.15355forward
CNT30620207Nymphaea colorataCajanus cajan30.6510.881.03232forward
CNT30596736Nymphaea colorataOryza meridionalis30.3830.4683.04230forward
CNT30354836Nymphaea colorataLactuca sativa21.9328.7782.53166forward
CNT30370935Nymphaea colorataOryza glumipatula79.5262.1978.74602forward
CNT30154791Nymphaea colorataPrunus persica86.6684.4381.71656forward
CNT30408809Nymphaea colorataPapaver somniferum36.4631.9483.7276forward
CNT30573870Nymphaea colorataVitis vinifera78.8684.6880.4597forward
CNT30705859Nymphaea colorataPrunus avium73.8474.8382.29559forward
CNT30641889Nymphaea colorataCannabis sativa39.8953.0883.77302forward
CNT3028162Nymphaea colorataTheobroma cacao68.6992.6979.23520forward
CNT3051702Nymphaea colorataAmborella trichopoda64.0779.2580485forward
CNT3023412Nymphaea colorataPopulus trichocarpa47.2963.3679.89358forward
CNT30121049Nymphaea colorataCitrus clementina73.1851.281.23554forward
CNT3035176Nymphaea colorataCucumis melo55.3576.1879.71419forward
CNT30330871Nymphaea colorataDioscorea rotundata35.1436.7987.22266forward
CNT30149986Nymphaea colorataBrachypodium distachyon28.9324.4180.82219forward
CNT30103220Nymphaea colorataOryza rufipogon43.8635.7481.02332forward
CNT30577473Nymphaea colorataOryza barthii26.2936.5181.91199forward
CNT30584421Nymphaea colorataEchinochloa crusgalli36.7234.4981.65278forward
CNT30498009Nymphaea colorataDigitaria exilis22.4617.3683.53170forward
CNT30176441Nymphaea colorataVigna angularis53.7667.2780.84407forward
CNT30558075Nymphaea colorataPanicum hallii36.3334.8581.09275forward
CNT30551544Nymphaea colorataOryza brachyantha45.7149.7880.35346forward
CNT3049544Nymphaea colorataCucumis sativus59.7156.4382.96452forward

Expression of CNT30640872

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MPGMDCNELKVDCSLEKLGCSLAMLDCSLVKWGYNQVRLDCRQEK*

>peptide 2 (32 aa)
MMDWWVNMQDLLDYNQESWDCMLEKWDYSQGK*

>peptide 3 (31 aa)
MDCIQEMMDCILVTKMVRKPCHQHMERTVHL*

Sequence

>CNT30640872
TGGAGATGAAGCACTGTAGGGGCTAGAAGGAGATATCCTTGGACTGCTTGGTGAATATGCCAGGGATGGACTGTAACGAGCTGAAGGTGGATTGTAGCTT
GGAGAAGTTGGGCTGTAGCTTGGCGATGTTGGACTGTAGCTTGGTGAAGTGGGGCTATAACCAGGTGAGGTTGGACTGTAGGCAGGAGAAGTAGGGCTAT
AAGAAGGTGATGTTGGACTGTAAGTAGGTGAGGTAGGACTGTAAGAAGGTGATGTTGGACTATATGAAGGCGAAGTTGGACTATATGCAGGAGAAGTAGG
ACTATAAGCTGGGGAAGTAGGACTATAACTTGGTGAAGTGGGGCTATAACTTGGGGATGTGGGGCTATAGCTTGGCGAAGTGGGGCTGTAACTTGGAGAT
GTAGGGCTATAACTGGGTGAGGTGGGAGAGTATGATGGACTGGTGGGTGAATATGCAGGACTTGTTGGACTATAACCAGGAGAGCTGGGACTGTATGTTG
GAGAAGTGGGACTATAGCCAGGGGAAGTAGGACTGTACCCAGGAGAAGTTGGACTATAACCAGGGGATGTAGGACTATATCCAGGAGAGGATGGACTGTA
TCCAGGAGATGATGGACTGTATCCTGGTGACGAAGATGGTGAGAAAGCCATGCCACCAACATATGGAGAGAACTGTGCATCTGTAATTGGTGATGCGCGG
ATATTTGGGCTAAACAAGTAGCTTGGGGACATCATGCCTTCATGGAATGGGGTTCCA