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Detailed information on CNT30497833


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT000794, E-value = 2e-41

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675703Digitaria exilisSetaria viridis26.4282.9290.56233forward
CNT30536082Digitaria exilisEucalyptus grandis33.565081.08296forward
CNT30376704Digitaria exilisArabidopsis thaliana39.5744.2983.09349forward
CNT30500730Digitaria exilisCoffea canephora27.127.6682.01239forward
CNT30616482Digitaria exilisSesamum indicum48.327.9380.52426forward
CNT30727661Digitaria exilisCorchorus capsularis40.0256.3981.3353forward
CNT30710529Digitaria exilisGlycine max28.4644.582.47251forward
CNT3091613Digitaria exilisSolanum tuberosum40.3647.0980.06356forward
CNT30591858Digitaria exilisMusa acuminata32.775780.97289forward
CNT3088022Digitaria exilisVigna radiata31.8665.0581.49281forward
CNT30442780Digitaria exilisAegilops tauschii53.7459.7783.54474forward
CNT3062262Digitaria exilisArabidopsis lyrata39.5763.6982.52349forward
CNT3016767Digitaria exilisZea mays84.9299.0788.79749forward
CNT30205386Digitaria exilisHelianthus annuus30.6137.7681.48270forward
CNT30476941Digitaria exilisArabidopsis halleri35.639.282.48314forward
CNT30354623Digitaria exilisLactuca sativa35.648.9982.48314forward
CNT30573870Digitaria exilisVitis vinifera40.750.9280.22359forward
CNT30121168Digitaria exilisCitrus clementina39.833.0580.63351forward
CNT30149986Digitaria exilisBrachypodium distachyon70.9869.7985.3626forward

Expression of CNT30497833

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MLGCNLEMWASMMDWLASKLDLLGSNSGL*

>peptide 2 (40 aa)
RVARTCNLEKSDCMVSSSGCLESKHAKGCTWLKKDCSLEK*

>peptide 3 (32 aa)
VELRAPVIWRSLTVWCHPRAAWRVSMRRAVLG*

>peptide 4 (33 aa)
MDCIPLMMESSHLATGKVRMPCAQHMVRTKHLC*

Sequence

>CNT30497833
GTAGAGTTGCGCGCACCTGTAATTTGGAGAAGTCTGACTGTATGGTGTCATCCTCGGGCTGCTTGGAGAGTAAGCATGCGAAGGGCTGTACTTGGCTGAA
GAAGGATTGTAGCTTGGAGAAGTAGGACTGTAGCTTGGCGATGTCGGGCTGTAGCTTGGTGATGTTGGGCTGTATCCAGGTGAGGTAGGACTGTATGCAG
GGGATGTCGGGCTGTATGAGGGGGAGGTCGGGCTGTATGAAGGAGACGTAGGGCTGTATGAAGGAGACGTAGGGCTGTATGATGGTGATGTTGGGCTATA
AGATGGTGACGTTGGGCTGTAGGCAGGAGAGGTAGGGCTATATGCAGGCGAGGTTGGACTATAAACTGGCGAGGTGGGGCTGTAGCTTGGGGATGTAGGA
CTGTAGCTCGGAGATGTTGGGCTGTAGCTTGGTGATGTAGGACTGTAGCTGGGAGATGTTGGGCTGTAACTTGGAGATGTGGGCGAGTATGATGGACTGG
TTGGCGAGTAAGTTGGACTTGTTGGGGAGTAATTCGGGCTTGTAGGACTGTAAGTGGGAGAGCCAGGTGTATATGATGGTGAGGTGGGACTATAGCTTGG
TGAAGCAGGGCTGTATGATGGAGAAAGCGGGCTATATCCTTTTTCTGGGGTGAAAACTGGAGAAGATGGACTGTATCCCCCTGATGATGGAGAGTAGCCA
CCTGGCGACGGGAAAGGTGAGAATGCCATGTGCCCAACATATGGTGAGAACGAAGCATCTGTGTTAATGGGGGAAGCCCTGATGTTCGGACTCAGCAGAT
AACTTGGCGACATCATTCCTTCATGATATGGTGTCCCAGAGATGGGTGAACGTGCTGGTGTCATGCCAAAGTCCAAACCTTC