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Detailed information on CNT30263459


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523536Brassica rapaSetaria italica64.761.9579.71350forward
CNT30640872Brassica rapaNymphaea colorata85.5861.1681.86463forward
CNT30536042Brassica rapaEucalyptus grandis89.0987.6480.91482forward
CNT30376379Brassica rapaArabidopsis thaliana10072.7287.8541forward
CNT30500604Brassica rapaCoffea canephora72.4663.7482.65392forward
CNT30267761Brassica rapaChenopodium quinoa96.4963.9780.08522forward
CNT30403782Brassica rapaBeta vulgaris53.0568.6680.14287forward
CNT30490956Brassica rapaOlea europaea53.7969.2982.13291forward
CNT30506120Brassica rapaNicotiana attenuata36.9734.1982200forward
CNT30708216Brassica rapaGlycine max73.5771.280.65398forward
CNT3042412Brassica rapaPrunus dulcis87.4363.8382.03473forward
CNT3091732Brassica rapaSolanum tuberosum76.8936.5281.01416forward
CNT30559890Brassica rapaActinidia chinensis70.6155.9380.89382forward
CNT30591924Brassica rapaMusa acuminata57.4958.3580.39311forward
CNT30508722Brassica rapaSolanum lycopersicum73.5777.5880.65398forward
CNT30442780Brassica rapaAegilops tauschii52.3135.6980.92283forward
CNT30256659Brassica rapaAvena sativa46.435.180.48251forward
CNT30311670Brassica rapaCamelina sativa92.4290.7485500forward
CNT3062262Brassica rapaArabidopsis lyrata101.2910085.22548forward
CNT30476914Brassica rapaArabidopsis halleri97.7894.4687.15529forward
CNT30366570Brassica rapaSorghum bicolor59.1552.2980.94320forward
CNT30596739Brassica rapaOryza meridionalis50.2841.8582.35272forward
CNT30154712Brassica rapaPrunus persica95.1966.1181.75515forward
CNT30573870Brassica rapaVitis vinifera83.7364.2679.91453forward
CNT3051605Brassica rapaAmborella trichopoda32.5326.5582.39176forward
CNT3035176Brassica rapaCucumis melo64.763.6483.14350forward
CNT30149777Brassica rapaBrachypodium distachyon53.0531.1680.84287forward
CNT30103220Brassica rapaOryza rufipogon60.2635.0982.52326forward
CNT30577473Brassica rapaOryza barthii50.2849.9182.35272forward
CNT30558075Brassica rapaPanicum hallii58.640.1881.07317forward

Expression of CNT30263459

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MQEKLDCKQVKLDCNSGMLGCSLETLDCSLETLGYS*

Sequence

>CNT30263459
CTGTAAGGGCTAGCTGGTGATAGTCTTGCATTGCTAGGGGAGTAAGCCAGAGATGGACTGTATTTAGCAGACTGAGGGTTGTAGCTTGGAGACGTCGGAC
CGTAACTAGGAGACGTTGGACTGTAGCTTGGAGATGTAGGGCTGTACCCAGGAGATGTAGGGCTGTATGCAGGTGAAGTAGGACTGTAAGAAGGAGATGT
TGGACTGTAGGAGGGTGAAGTAGGGCTGTAAGAAGGCGATGTCGGACTGTAAGATGGTGAAGTAGGGCTGTATGCAGGAGAAGTTGGACTGTAAGCAGGT
GAAGTTGGACTGTAACTCGGGGATGTTGGGCTGTAGCTTGGAGACGTTGGACTGTAGCTTGGAGACGTTGGGCTATAGCTAGGAGACGTTGGGCTGTAGC
TAGGGGAGGTGGGAGAATATGAAGGACTTGTTGGAGAATAAGCAGGGCTAGTTGGGCTATAGCCAGGAGAACTAGGACTGTACGTGGGAGAAGTGGGACT
ATAGCCAGGAGAAGTCGGACTGTATCCAGGTGAAGTCGGAC