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Detailed information on CNT30605857


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000067, E-value = 3e-33

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523536Gossypium raimondiiSetaria italica30.9544.4282.07251forward
CNT30316118Gossypium raimondiiCorylus avellana70.7880.3979.97574forward
CNT30516792Gossypium raimondiiJuglans regia102.2293.1581.54829forward
CNT30376525Gossypium raimondiiArabidopsis thaliana43.946.5483.71356forward
CNT30616482Gossypium raimondiiSesamum indicum89.7747.7478.57728forward
CNT3021339Gossypium raimondiiCitrullus lanatus74.9795.980.43608forward
CNT30727660Gossypium raimondiiCorchorus capsularis66.4698.5490.17539forward
CNT30378908Gossypium raimondiiManihot esculenta86.4474.2681.6701forward
CNT30489004Gossypium raimondiiOlea europaea28.7337.9583.26233forward
CNT3091554Gossypium raimondiiSolanum tuberosum35.7642.1583.1290forward
CNT30307041Gossypium raimondiiTriticum aestivum33.5450.7581.99272forward
CNT30400271Gossypium raimondiiTriticum turgidum43.1670.7180.57350forward
CNT30591858Gossypium raimondiiMusa acuminata58.6993.8980.67476forward
CNT30234460Gossypium raimondiiBrassica oleracea87.18100.5779.35707forward
CNT30554721Gossypium raimondiiOryza glaberrima45.7539.6882.21371forward
CNT30442780Gossypium raimondiiAegilops tauschii46.3647.4179.26376forward
CNT30312353Gossypium raimondiiCamelina sativa38.175.3786.08309forward
CNT3062262Gossypium raimondiiArabidopsis lyrata48.7172.0882.53395forward
CNT3079663Gossypium raimondiiBrassica juncea48.7174.2582.03395forward
CNT30263540Gossypium raimondiiBrassica rapa67.284.581.1545forward
CNT30468540Gossypium raimondiiSaccharum spontaneum34.2832.184.17278forward
CNT3016767Gossypium raimondiiZea mays42.0545.1181.82341forward
CNT30216752Gossypium raimondiiKalanchoe fedtschenkoi24.2942.5583.25197forward
CNT3067979Gossypium raimondiiLeersia perrieri39.4688.8983.75320forward
CNT30713436Gossypium raimondiiMalus domestica golden21.0953.1184.21171forward
CNT30625547Gossypium raimondiiDaucus carota45.7535.7480.05371forward
CNT30688162Gossypium raimondiiTriticum urartu46.1255.6581.28374forward
CNT30341749Gossypium raimondiiEragrostis tef44.7681.5783.2363forward
CNT30476898Gossypium raimondiiArabidopsis halleri43.977.2283.43356forward
CNT30154777Gossypium raimondiiPrunus persica94.5795.8879.92767forward
CNT30410142Gossypium raimondiiPapaver somniferum75.5993.1680.26613forward
CNT30573855Gossypium raimondiiVitis vinifera69.4293.5281.17563forward
CNT30705862Gossypium raimondiiPrunus avium81.1361.9681.46658forward
CNT30642028Gossypium raimondiiCannabis sativa61.6597.6681.4500forward
CNT3027877Gossypium raimondiiTheobroma cacao48.7110090.13395forward
CNT3051605Gossypium raimondiiAmborella trichopoda74.8591.5578.09607forward
CNT30120999Gossypium raimondiiCitrus clementina99.6360.2184.53808forward
CNT30330867Gossypium raimondiiDioscorea rotundata37.2441.7780.79302forward
CNT30149777Gossypium raimondiiBrachypodium distachyon33.1729.2183.27269forward
CNT30577473Gossypium raimondiiOryza barthii27.6241.182.59224forward

Expression of CNT30605857

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSDCMMAMLGCMMEKWGCMQVKLGYMPVK*

>peptide 2 (74 aa)
MKDCSQEMMGCNQGMTWERMPSRQHKVRTEHPKWERDGDLGSASNLETSCLHDMEFLILEIEQVSCQIPDLPCN*

>peptide 3 (35 aa)
VMLDCKDWKETTLDCLVSMLEMDCTWLIADCNLER*

Sequence

>CNT30605857
GGTGATGTTGGACTGTAAGGACTGGAAGGAGACAACCTTGGACTGCTTGGTGAGTATGCTAGAGATGGACTGTACTTGGCTGATTGCGGATTGTAACTTG
GAGAGGTAGGGCTATAGCTAGGTGACGTGGGACCGTAACTTGGTGAGGTCGGACTGTACCCAGGAGAAGTGGGGCTATATGCTGGGGAAGTAGGGCTGTA
TGATGGAGATGTAGGGCTATAGGAGGGTGAGGTTGGGCTGTAAGAAGGAGATGTCGGACTGTATGATGGCGATGTTGGGCTGTATGATGGAGAAGTGGGG
CTGTATGCAGGTGAAGTTGGGCTATATGCCGGTGAAGTAGGGCTGTAGCTTGGTGAAGTTGGACTATAGCTGGGAGATGTGGGACTATAACTTGGTGAAG
TAGGACTGTAACTTGGAGACGTAGGGCTGTAGCTTGGAGAGGTAGGGCTATAGCTTGGTGAGGTTGGAGAATAAGAGGGACTTGTAGGAGAGTAGGCTGG
ACTTGTTGGGCTGTAACCTGGTGAACTAGGACTGTAAGTAGGAGATGTAGGGCTGTAACCAGGCGAGGTAGGACTGTAGCCAGGAGATGAAGGACTGTAG
CCAGGAGATGATGGGCTGTAACCAGGGGATGACGTGGGAGAGAATGCCATCCCGCCAACATAAGGTGAGAACTGAGCATCCGAAATGGGAGAGAGACGGA
GATTTGGGCTCAGCAAGTAACTTGGAGACATCATGCCTTCATGATATGGAGTTCCTGATACTGGAGATCGAGCAGGTGTCATGCCAAATTCCAGACCTTC
CATGTAACTAG