Detailed information on CNT30341751


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT000794, E-value = 5e-31

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535924Eragrostis tefEucalyptus grandis36.9861.0986.03179forward
CNT30315993Eragrostis tefCorylus avellana54.3426.2283.65263forward
CNT30700558Eragrostis tefQuercus lobata45.2581.1183.56219forward
CNT30616515Eragrostis tefSesamum indicum59.9243.0381.38290forward
CNT30269243Eragrostis tefChenopodium quinoa80.7942.9282.86391forward
CNT30403468Eragrostis tefBeta vulgaris49.5931.0181.25240forward
CNT30400271Eragrostis tefTriticum turgidum86.3684.4486.12418forward
CNT30554634Eragrostis tefOryza glaberrima94.0155.0287.25455forward
CNT3062262Eragrostis tefArabidopsis lyrata67.9860.0481.16329forward
CNT30216750Eragrostis tefKalanchoe fedtschenkoi58.0657.3582.21281forward
CNT3067990Eragrostis tefLeersia perrieri78.5199.7490.26380forward
CNT30205386Eragrostis tefHelianthus annuus54.3436.7882.51263forward
CNT30574166Eragrostis tefVitis vinifera73.5582.9879.21356forward
CNT3027914Eragrostis tefTheobroma cacao31.250.586.09151forward
CNT30149986Eragrostis tefBrachypodium distachyon78.5142.3688.16380forward
CNT30103004Eragrostis tefOryza rufipogon94.0145.6487.47455forward

Expression of CNT30341751

Peptides detected in this lncRNA

>peptide 1 (30 aa)
LMKDCSLVKLDCSSAKLGCNLVMSGCNQEK*

>peptide 2 (39 aa)
MREMSGCMMGMWGCMKEMWGCMKEMWGCKTEMLGCMQEM*

Sequence

>CNT30341751
GGCTGATGAAGGATTGTAGCTTGGTGAAGTTGGACTGTAGTTCGGCGAAGTTGGGCTGTAACTTGGTGATGTCGGGCTGTAACCAGGAGAAGTAGGGCTG
TATGCAGGCGATGTAGGGCTGTATGAGGGTGATGTAGGGCTGTATGAGGGAGATGTCGGGCTGTATGATGGGGATGTGGGGCTGTATGAAGGAGATGTGG
GGCTGTATGAAGGAGATGTGGGGCTGTAAGACGGAGATGTTGGGCTGTATGCAGGAGATGTAGGGCTATATGCTGGCGAGGTAGGACTATAAACTGGGGA
GGTGGGACTGTAACTCGGAGAGGTGGGACTATAACTCGGTGAGGTGGGGCTGTAGCTTGGCGATGTTGGACTATAGCTCGGAGATGTAGGGCTGTAACTT
GGTGATGTGGGCGAGTATGACGGACTGGTGGGTGAGTATGATGGACTTGTTGGCGAGTAAGTCGGACTTGTTGGGCTATATGTA