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Detailed information on CNT30648676


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSTUT001430, E-value = 8e-77

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640872Rosa chinensisNymphaea colorata42.4241.7482.59316forward
CNT30316118Rosa chinensisCorylus avellana47.7949.8680.62356forward
CNT30549166Rosa chinensisIpomoea triloba42.5547.1783.28317forward
CNT30516792Rosa chinensisJuglans regia47.3839.6681.87353forward
CNT30616482Rosa chinensisSesamum indicum26.8513.1185200forward
CNT30267763Rosa chinensisChenopodium quinoa29.2631.2883.03218forward
CNT3021339Rosa chinensisCitrullus lanatus33.9639.9182.61253forward
CNT30727661Rosa chinensisCorchorus capsularis35.9742.8182.84268forward
CNT30379091Rosa chinensisManihot esculenta42.0153.0584.35313forward
CNT30524932Rosa chinensisPhaseolus vulgaris25.139.8782.89187forward
CNT30628784Rosa chinensisVigna unguiculata47.7946.7880.62356forward
CNT30489004Rosa chinensisOlea europaea32.0838.9383.68239forward
CNT30710559Rosa chinensisGlycine max42.5548.0382.97317forward
CNT3042435Rosa chinensisPrunus dulcis44.4347.8388.52331forward
CNT3091337Rosa chinensisSolanum tuberosum47.7943.6383.15356forward
CNT30559586Rosa chinensisActinidia chinensis30.7428.3884.28229forward
CNT30237809Rosa chinensisBrassica oleracea16.2421.890.91121forward
CNT30508793Rosa chinensisSolanum lycopersicum34.566.5883.66257forward
CNT30554593Rosa chinensisOryza glaberrima13.5631.5685.15101forward
CNT30145737Rosa chinensisMedicago truncatula20.8125.1685.16155forward
CNT3062262Rosa chinensisArabidopsis lyrata20.8128.2884.52155forward
CNT30607691Rosa chinensisGossypium raimondii40.9445.0582.3305forward
CNT30216752Rosa chinensisKalanchoe fedtschenkoi25.6441.2582.72191forward
CNT30625279Rosa chinensisDaucus carota41.3430.4680.19308forward
CNT30476941Rosa chinensisArabidopsis halleri46.1742.9579.36344forward
CNT30154791Rosa chinensisPrunus persica47.7945.8287.92356forward
CNT30408809Rosa chinensisPapaver somniferum21.6118.6383.85161forward
CNT30573870Rosa chinensisVitis vinifera42.8245.2582.45319forward
CNT30705859Rosa chinensisPrunus avium47.7947.6687.36356forward
CNT30121049Rosa chinensisCitrus clementina42.5529.385.17317forward
CNT3035221Rosa chinensisCucumis melo2039.0183.89149forward
CNT30330871Rosa chinensisDioscorea rotundata37.9939.1482.33283forward
CNT30577348Rosa chinensisOryza barthii13.5639.385.15101forward
CNT3049544Rosa chinensisCucumis sativus42.1539.284.39314forward

Expression of CNT30648676

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MPDWLDYNLESLDYRLEKWDYNQGRWGCNLGMWGYNQGTWGCNLGMMDCSQGMMGCSLEMK*

>peptide 2 (46 aa)
MREMLGCMMGKWGCKRGKSGCMRGKSGCKRGKSGCSLERSGCSLER*

Sequence

>CNT30648676
GGAGAGGTAGGACTATATGGGCTAGCTGGTGACAATCTTGGACTGCTCGGAGAGTAAGCTACCGATGGGCTATATTTTGCAGAAGGAGGATTGTAACTTG
GAGAGGTAGGGCTATAACTAGGAGAGGTTGGACTATAACTTGGGGAAGTAGGGCTGTAACCAGGAGAAGTTGGGCTGTAGGCAGGTGAAGTTGGGCTGTA
GGAGGGGGATGTTGGGCTGTAGGAGGGGGATGTGGGGCTGTAGGAGGGCGAAGTGGGGCTGTAGGAGGGCGAAGTGGGCTGTATGAGGGAGATGTTGGGC
TGTATGATGGGGAAGTGGGGCTGTAAGCGGGGGAAGTCGGGCTGTATGCGGGGGAAGTCGGGCTGTAAGCGGGGGAAGTCGGGCTGTAGCTTGGAGAGGT
CGGGCTGTAGCTTGGAGAGGTAGGGCTGTAGCTTGGAGATGTAGGAGAGTAAGACGGACTTGTAGGAGAATATGCCGGACTGGTTGGACTATAACCTGGA
GAGCTTGGACTATAGGTTGGAGAAGTGGGACTATAACCAGGGGAGGTGGGGCTGTAACCTGGGGATGTGGGGCTATAACCAGGGGACGTGGGGCTGTAAC
CTGGGGATGATGGACTGTAGCCAGGGGATGATGGGCTGTAGCCTGGAGATGAAGTAGGAGAGAATGCCATTCCACCGACATAGGGAGAAAACTGAGCATC
TGAGATGGGAGACATTCGCATATTTGGGCTCAGCAAATAGTTAGG