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Detailed information on CNT30596736


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT000794, E-value = 2e-43

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675703Oryza meridionalisSetaria viridis32.0586.1281.4242forward
CNT30640872Oryza meridionalisNymphaea colorata30.4630.3883.04230forward
CNT30536082Oryza meridionalisEucalyptus grandis32.4541.3981.63245forward
CNT30549166Oryza meridionalisIpomoea triloba31.6635.5782.01239forward
CNT30500604Oryza meridionalisCoffea canephora27.6833.9883.25209forward
CNT30616460Oryza meridionalisSesamum indicum50.7326.6981.2383forward
CNT30267761Oryza meridionalisChenopodium quinoa42.3839.2282.19320forward
CNT3021339Oryza meridionalisCitrullus lanatus30.8636.7581.55233forward
CNT30727661Oryza meridionalisCorchorus capsularis31.2637.782.63236forward
CNT30378927Oryza meridionalisManihot esculenta28.4834.7383.26215forward
CNT30628902Oryza meridionalisVigna unguiculata35.2360.0581.2266forward
CNT30490956Oryza meridionalisOlea europaea30.4654.7680.87230forward
CNT30506120Oryza meridionalisNicotiana attenuata4051.6281.46302forward
CNT3042412Oryza meridionalisPrunus dulcis31.2631.8582.63236forward
CNT3091337Oryza meridionalisSolanum tuberosum36.0333.3381.62272forward
CNT30193210Oryza meridionalisSecale cereale23.3182.2488.07176forward
CNT30304911Oryza meridionalisTriticum aestivum60.2676.0986.37455forward
CNT30400472Oryza meridionalisTriticum turgidum59.8745.3485.62452forward
CNT30559890Oryza meridionalisActinidia chinensis31.6634.9983.26239forward
CNT30592011Oryza meridionalisMusa acuminata27.2850.8682.52206forward
CNT3087851Oryza meridionalisVigna radiata24.920.5784.04188forward
CNT30234460Oryza meridionalisBrassica oleracea31.663482.85239forward
CNT30508904Oryza meridionalisSolanum lycopersicum36.0344.0182.72272forward
CNT30554580Oryza meridionalisOryza glaberrima89.899.7198.08678forward
CNT30145737Oryza meridionalisMedicago truncatula37.2245.6282.21281forward
CNT30443444Oryza meridionalisAegilops tauschii65.8353.3884.71497forward
CNT30256655Oryza meridionalisAvena sativa56.2994.6586.82425forward
CNT30668234Oryza meridionalisTriticum dicoccoides22.1228.491.62167forward
CNT30311681Oryza meridionalisCamelina sativa38.8140.8181.91293forward
CNT3062262Oryza meridionalisArabidopsis lyrata32.8545.2682.66248forward
CNT3076593Oryza meridionalisBrassica juncea34.4447.6281.54260forward
CNT30263848Oryza meridionalisBrassica rapa28.4850.8384.19215forward
CNT30468704Oryza meridionalisSaccharum spontaneum60.5337.0984.68457forward
CNT30141877Oryza meridionalisLolium perenne56.1694.6486.79424forward
CNT3017147Oryza meridionalisZea mays90.9996.0880.2687forward
CNT30608057Oryza meridionalisGossypium raimondii31.2639.884.32236forward
CNT30216750Oryza meridionalisKalanchoe fedtschenkoi38.4159.1879.66290forward
CNT3067990Oryza meridionalisLeersia perrieri44.7788.7188.17338forward
CNT30205386Oryza meridionalisHelianthus annuus38.0140.1480.49287forward
CNT30625502Oryza meridionalisDaucus carota37.6234.8979.93284forward
CNT30688162Oryza meridionalisTriticum urartu87.6898.5181.27662forward
CNT30476898Oryza meridionalisArabidopsis halleri32.0552.4982.64242forward
CNT30366537Oryza meridionalisSorghum bicolor99.0785.7879.41748forward
CNT30620243Oryza meridionalisCajanus cajan34.778.9281.68262forward
CNT30370935Oryza meridionalisOryza glumipatula102.6580.0694.71775forward
CNT30154777Oryza meridionalisPrunus persica31.2629.583.05236forward
CNT30410012Oryza meridionalisPapaver somniferum41.1981.8479.74311forward
CNT30573870Oryza meridionalisVitis vinifera47.9551.3579.83362forward
CNT30705862Oryza meridionalisPrunus avium49.435.1279.36373forward
CNT30642025Oryza meridionalisCannabis sativa27.6840.7482.3209forward
CNT3027877Oryza meridionalisTheobroma cacao30.4658.2383.04230forward
CNT30121049Oryza meridionalisCitrus clementina31.6622.0982.43239forward
CNT3035176Oryza meridionalisCucumis melo34.0446.7380.93257forward
CNT30149777Oryza meridionalisBrachypodium distachyon103.4484.884.12781forward
CNT30103004Oryza meridionalisOryza rufipogon102.7877.8392.14776forward
CNT30584421Oryza meridionalisEchinochloa crusgalli100.6694.2981.58760forward
CNT30497905Oryza meridionalisDigitaria exilis70.4658.9183.46532forward
CNT30176441Oryza meridionalisVigna angularis45.9657.3679.83347forward
CNT30558075Oryza meridionalisPanicum hallii70.3367.383.62531forward
CNT30551544Oryza meridionalisOryza brachyantha97.22105.6186.51734forward
CNT30335475Oryza meridionalisCynara cardunculus38.8122.5681.91293forward
CNT3049544Oryza meridionalisCucumis sativus39.2136.9580.41296forward

Expression of CNT30596736

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MMEKWDCSWVKQDYMMEKLGCILALDCIPEKMDCNHPLTMECSLVKVLVRKPFLQHMARTEHL*

>peptide 2 (88 aa)
MQEMSDCMRVMSDCMRGKWGCKTETLDCMMEMLGYMMVMWGCKMVMWGCKMVMWGCMQEKLDYMQEKSDYKLVMSDCSSEKWDYNLVM*

>peptide 3 (54 aa)
LVKSDCKGSALGCLESTRGKDCTWPKKDCSLVKLDCNLVKLGCSLEMSGCNQVM*

Sequence

>CNT30596736
ATTTGGTGAAGTCTGACTGTAAGGGCTCAGCCTTGGGCTGCTTGGAGAGTACGCGTGGGAAGGACTGTACTTGGCCGAAGAAGGATTGTAGCTTGGTGAA
GTTGGACTGTAATTTGGTGAAGTTGGGCTGTAGCTTGGAGATGTCGGGCTGTAACCAGGTGATGTAGGGCTGTATGCAGGAGATGTCGGACTGTATGAGG
GTGATGTCGGACTGTATGAGGGGGAAGTGGGGCTGTAAGACGGAGACGTTGGACTGTATGATGGAGATGTTGGGCTATATGATGGTGATGTGGGGCTGTA
AGATGGTGATGTGGGGCTGTAAGATGGTGATGTGGGGCTGTATGCAGGAGAAGTTGGACTATATGCAGGAGAAGTCGGACTATAAACTGGTGATGTCGGA
CTGTAGCTCGGAGAAGTGGGACTATAACTTGGTGATGTAGGGCTGTAGCTTGGAGATGTTGGTGAGTATGATGGACTGGTAGGCGAGTATGACGGACTGG
TAGGTGAGTATGATGGACTTGTTGGCGAGTAAGTAGGAGAGCCAGGTGTATATGATGGAGAAGTGGGACTGTAGCTGGGTGAAGCAGGACTATATGATGG
AGAAGTTGGGCTGTATCCTGGCCCTGGACTGTATACCGGAGAAGATGGACTGTAACCACCCCCTGACGATGGAGTGTAGCCTGGTGAAGGTACTGGTGAG
AAAGCCATTCCTCCAACATATGGCGAGAACTGAGCATCTGTAATGGGGGAAGCCC