« Back to Saccharum spontaneum search


Detailed information on CNT30468644


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSTUT001430, E-value = 8e-16

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523577Saccharum spontaneumSetaria italica49.6375.4493.58467forward
CNT30315993Saccharum spontaneumCorylus avellana29.8628.0280.78281forward
CNT30549269Saccharum spontaneumIpomoea triloba22.2138.8581.34209forward
CNT30376704Saccharum spontaneumArabidopsis thaliana31.8838.0782.67300forward
CNT30616460Saccharum spontaneumSesamum indicum4428.8580.43414forward
CNT30524942Saccharum spontaneumPhaseolus vulgaris36.2450.8279.47341forward
CNT3091192Saccharum spontaneumSolanum tuberosum32.5244.1680.39306forward
CNT30591924Saccharum spontaneumMusa acuminata27.6348.7881.54260forward
CNT3087851Saccharum spontaneumVigna radiata36.2437.3180.35341forward
CNT30235097Saccharum spontaneumBrassica oleracea25.2929.7182.35238forward
CNT30508904Saccharum spontaneumSolanum lycopersicum35.654.2179.4335forward
CNT30554779Saccharum spontaneumOryza glaberrima68.3368.7782.43643forward
CNT3062262Saccharum spontaneumArabidopsis lyrata30.6152.5582.29288forward
CNT30263540Saccharum spontaneumBrassica rapa25.7237.5281.4242forward
CNT30476941Saccharum spontaneumArabidopsis halleri31.8837.4582300forward
CNT30370935Saccharum spontaneumOryza glumipatula82.4780.1781.7776forward
CNT30109704Saccharum spontaneumOryza longistaminata24.7641.9184.98233forward
CNT30103173Saccharum spontaneumOryza rufipogon77.0574.6781.52725forward
CNT30497905Saccharum spontaneumDigitaria exilis82.4785.9489.69776forward
CNT30558075Saccharum spontaneumPanicum hallii80.6696.288.01759forward
CNT30551544Saccharum spontaneumOryza brachyantha26.6736.1285.66251forward

Expression of CNT30468644

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MDCIPLTMESNHLVKGMVRMPCAQHMVRTKHLY*

>peptide 2 (35 aa)
CSLEKSDCMESSWGCLESMHVKGCTWLMKDCSLEK*

Sequence

>CNT30468644
CTGTAGCTTGGAGAAGTCTGACTGTATGGAGTCATCCTGGGGCTGCTTGGAGAGTATGCATGTGAAGGGCTGTACTTGGCTGATGAAGGATTGTAGCTTG
GAGAAGTAGGACTGTAGCTCGGAGAAGTAGGACTGTAGCTCGGTGATGTTGGGCTGTATCCTGGCGAGTATGCATGTGAAGGGCTGTACTTGGCTGATGA
AGGATTGTAGCTTGGAGAAGTAGGACTGTAGCTCGGAGAAGTAGGACTGTAGCTTGGTGATGTTGGGCTGTATCCTGGCGAGGTAGGGCTGTATGCAGGT
GATGTCGGGCTGTATGAGGGAGATGTAGGGCTATATGAGGGGGAAGTAGGACTGTATGATGGGGAGGTAGGGCTGTATGACGGGGATGTTGGGCTGTATG
ATGGTGATGTAGGGCTATAAGATGGCGAAGTTGGACTGTAAGATGGCGATGTGGGGCTGTATGCAGGAGATGTAGGGCTATATGCTGGTGAGGTTGGACT
ATAAACTGGTGAGGTGGGGCTGTAGCTTGGTGATGTAGGACTATAGCTAGGAGATGTAGGGCTGTAACTTGGTGATGTAGGACTGTAGCTAGGAGATGTT
GGGCTGTAACTCGGAGATGTCGGTGAGTATGATGGACTGGTAGGCGAGTAAGTCGGACTTGTTGGGGAGTAATTCGGGCTTGTGGGACTGTAGGTGGGAG
AGCCAGGTGTATATGATGGTGAGGTGGGACTATAGCTTGGCGATGCAGGGCTGTATGATGGAGAAAGAGGGCTATATCCTTTCTCTGGGGTGAAAACTGG
AGAAGATGGACTGTATCCCCCTGACGATGGAGAGTAACCACCTGGTGAAGGGAATGGTGAGAATGCCATGTGCCCAACATATGGTGAGAACGAAGCATCT
GTATTAATGGGGGAAGCCCTGATGTTTGGACTCAGCAGATA