« Back to Cannabis sativa search


Detailed information on CNT30642143


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000067, E-value = 4e-31

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30376158Cannabis sativaArabidopsis thaliana91.4842.0682.98376forward
CNT30500604Cannabis sativaCoffea canephora73.2448.9482.72301forward
CNT30490956Cannabis sativaOlea europaea50.8549.7681.82209forward
CNT30312353Cannabis sativaCamelina sativa88.8189.0284.38365forward
CNT3062262Cannabis sativaArabidopsis lyrata91.4868.6181.12376forward
CNT30216750Cannabis sativaKalanchoe fedtschenkoi88.0873.8879.28362forward
CNT30476941Cannabis sativaArabidopsis halleri91.4846.9482.18376forward
CNT30370935Cannabis sativaOryza glumipatula58.882582.64242forward
CNT30705862Cannabis sativaPrunus avium93.4336.1686.46384forward
CNT30584443Cannabis sativaEchinochloa crusgalli51.5830.5981.13212forward
CNT30176441Cannabis sativaVigna angularis69.146.9481.69284forward

Expression of CNT30642143

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MVMLGCRKGMWDCKMGRLGCMLGRWDCKQGKLGCKQVRSDCNLVRLDCNLEMLDCNWVKLDCNLEK*

>peptide 2 (30 aa)
VRLGCNLARLDYNQEKLDCRLVKLDYRTEM*

Sequence

>CNT30642143
GTGAGGTTGGGCTGTAACTTGGCGAGGTTGGACTATAACCAGGAGAAGTTGGACTGTAGGCTGGTGAAGTTGGACTATAGGACGGAGATGTAGGGCTGTA
GGATGGTGATGTTGGGCTGTAGGAAGGGGATGTGGGACTGTAAGATGGGGAGGTTGGGCTGTATGCTGGGGAGGTGGGACTGTAAGCAGGGGAAGTTGGG
CTGTAAGCAGGTGAGGTCGGACTGTAACTTGGTGAGGTTGGACTGTAACTTGGAGATGTTGGACTGTAACTGGGTGAAGTTGGACTGTAACTTGGAGAAG
TAGGGCTATAGCTTGGTGATGTGGGTGAATAAGATGGACTTGTAGGAGAATAGGCAGGACTTGTTGGACTATAGCCCGGGAGCTAGGGACTGTAGGTTGG
AGATGTGGGGC