« Back to Prunus avium search


Detailed information on CNT30705862


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000067, E-value = 8e-84

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30536042Prunus aviumEucalyptus grandis51.3299.0981.1545forward
CNT30316118Prunus aviumCorylus avellana69.02102.6679.4733forward
CNT30516897Prunus aviumJuglans regia83.2410082.81884forward
CNT30500730Prunus aviumCoffea canephora43.1353.0181.66458forward
CNT30524942Prunus aviumPhaseolus vulgaris56.489.2780.8599forward
CNT30559586Prunus aviumActinidia chinensis46.5261.2182.39494forward
CNT30591858Prunus aviumMusa acuminata30.9864.8981.76329forward
CNT30554634Prunus aviumOryza glaberrima30.8939.6679.88328forward
CNT30256659Prunus aviumAvena sativa25.6138.0481.25272forward
CNT30312132Prunus aviumCamelina sativa62.9103.0979.34668forward
CNT3062262Prunus aviumArabidopsis lyrata37.1972.0879.24395forward
CNT3016767Prunus aviumZea mays31.3644.0580.48333forward
CNT30605857Prunus aviumGossypium raimondii61.9681.1381.46658forward
CNT3067979Prunus aviumLeersia perrieri30.3289.4480.75322forward
CNT30713436Prunus aviumMalus domestica golden27.3190.0688.62290forward
CNT30625385Prunus aviumDaucus carota36.9138.9380.87392forward
CNT30680596Prunus aviumTriticum urartu28.7267.7880.66305forward
CNT30350935Prunus aviumEragrostis tef23.9234.1483.46254forward
CNT30366857Prunus aviumSorghum bicolor25.3327.3981.78269forward
CNT30620207Prunus aviumCajanus cajan40.319.9282.71428forward
CNT30596736Prunus aviumOryza meridionalis35.1249.479.36373forward
CNT30370935Prunus aviumOryza glumipatula28.4431.281.13302forward
CNT30154777Prunus aviumPrunus persica75.3310092.75800forward
CNT30573870Prunus aviumVitis vinifera44.4466.9583.26472forward
CNT30642143Prunus aviumCannabis sativa36.1693.4386.46384forward
CNT30120999Prunus aviumCitrus clementina78.7262.383.73836forward
CNT3035176Prunus aviumCucumis melo38.8975.0982.08413forward
CNT30150463Prunus aviumBrachypodium distachyon32.1138.7981.23341forward
CNT30103004Prunus aviumOryza rufipogon30.8932.980.49328forward
CNT30176441Prunus aviumVigna angularis38.3267.2783.05407forward
CNT30558075Prunus aviumPanicum hallii25.8934.8582.55275forward
CNT30551544Prunus aviumOryza brachyantha33.3350.9480.79354forward

Expression of CNT30705862

Peptides detected in this lncRNA

>peptide 1 (35 aa)
KELQRLINHVRVIIPLISTDQSTTLSNSDAISAVR*

>peptide 2 (57 aa)
MWDYMQVKSGCKQVMLDCNLVKLDCNLEKWDCNLEKWDCNLEKWGYSWVRWVSMMDL*

>peptide 3 (55 aa)
MPFLQHREKTGHLKWVTDEGLGSANNLETSCPHDMEFPTLENEMVSYRNQDHPYN*

>peptide 4 (69 aa)
MVTFLDCLESMPTMDCIWLTEDCNLEMWGYSWEKLGCNQEKLGCRPVRLGCRMEMWGCRRATLGCRKVM*

Sequence

>CNT30705862
CAAGGAACTGCAGAGGCTTATAAATCATGTGAGAGTAATAATCCCACTCATAAGCACTGATCAGTCAACCACACTCAGCAACTCTGATGCCATAAGTGCA
GTTCGATAGACAGCTCACCTGTAATTTGGAGACGTAGGACTATATGGACTAGATGGTGACATTCTTGGACTGCTTGGAGAGTATGCCGACGATGGACTGT
ATTTGGCTGACTGAGGATTGTAACTTGGAGATGTGGGGCTATAGCTGGGAGAAGTTGGGCTGTAACCAGGAGAAGTTGGGCTGTAGGCCGGTGAGGTTGG
GCTGTAGGATGGAGATGTGGGGCTGTAGGAGGGCGACGTTGGGCTGTAGGAAGGTGATGTAGGGCTATAGGAAGGCGATGTAGGGCTGTAGGAAGGTGAT
GTGGGACTATATGCAGGTGAAGTCGGGCTGTAAGCAGGTGATGTTGGACTGTAACTTGGTGAAGTTGGACTGTAACTTGGAGAAGTGGGACTGTAACTTG
GAGAAGTGGGACTGTAACTTGGAGAAGTGGGGCTATAGCTGGGTGAGGTGGGTGAGTATGATGGACTTGTAGGAGAATAGGCCGGACTGGTTGGACTATA
ACCTGGAGAACTAGGACTATAGGTTGGAGAGGTGGGACTATAACCAGGGGATGTGGGACTGTATCCAGGGGAGGACGGACTGTAGCCAGGGGATGATGGG
CTGTAGCCCGGAGATGAAGTAGGAGAGAATGCCATTCCTCCAACATAGGGAGAAAACTGGGCATCTGAAATGGGTGACAGACGAAGGTTTGGGCTCAGCA
AATAATTTGGAGACATCATGCCCTCATGATATGGAGTTCCCGACACTGGAGAACGAGATGGTGTCATACCGAAATCAAGACCATCCATATAACTAGGTAG
CTGGAGTTCAATTGCATTCTTCAACATCTCGTCATTGAGATACAGGGCACAGTCTCCTGTGCCAATGGGTGCAAGCTGGCCTAACATTATGTTTTCAGTT
ACACCTCTCAAATAATCTGTTTCTGCAAACACTGCAGCATCAAGAAGAATATCGACAGTTTC