« Back to Triticum turgidum search


Detailed information on CNT30400271


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSTUT001430, E-value = 2e-36

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675703Triticum turgidumSetaria viridis50.7189.3282.87251forward
CNT30536082Triticum turgidumEucalyptus grandis62.6352.3679.68310forward
CNT30549166Triticum turgidumIpomoea triloba53.1339.1480.61263forward
CNT30516792Triticum turgidumJuglans regia58.3832.4783.04289forward
CNT30376525Triticum turgidumArabidopsis thaliana62.2240.2681.49308forward
CNT30500604Triticum turgidumCoffea canephora48.8939.3581.82242forward
CNT30616460Triticum turgidumSesamum indicum78.7927.1879.49390forward
CNT30269263Triticum turgidumChenopodium quinoa88.2857.3580.55437forward
CNT30727661Triticum turgidumCorchorus capsularis49.4939.1480.82245forward
CNT30379051Triticum turgidumManihot esculenta84.0459.678.85416forward
CNT30403468Triticum turgidumBeta vulgaris34.5522.0983.63171forward
CNT30524942Triticum turgidumPhaseolus vulgaris56.9742.0380.85282forward
CNT30628927Triticum turgidumVigna unguiculata60.253.2180.2298forward
CNT30490956Triticum turgidumOlea europaea44.0451.981.19218forward
CNT30506120Triticum turgidumNicotiana attenuata70.159.3279.25347forward
CNT30710529Triticum turgidumGlycine max51.3145.0480.71254forward
CNT3042412Triticum turgidumPrunus dulcis51.7234.5581.25256forward
CNT3091613Triticum turgidumSolanum tuberosum72.5347.4980.5359forward
CNT30193210Triticum turgidumSecale cereale41.2195.3396.57204forward
CNT30559890Triticum turgidumActinidia chinensis82.2259.5979.36407forward
CNT30591858Triticum turgidumMusa acuminata44.8543.7981.08222forward
CNT3088022Triticum turgidumVigna radiata57.3765.7479.58284forward
CNT30234460Triticum turgidumBrassica oleracea54.3438.2682.53269forward
CNT30508904Triticum turgidumSolanum lycopersicum72.5358.0980.5359forward
CNT30554634Triticum turgidumOryza glaberrima94.3456.4785.87467forward
CNT30145737Triticum turgidumMedicago truncatula67.0753.980.12332forward
CNT30442780Triticum turgidumAegilops tauschii10062.4291.52495forward
CNT30311656Triticum turgidumCamelina sativa41.6237.1282.52206forward
CNT3062262Triticum turgidumArabidopsis lyrata54.9549.6481.25272forward
CNT3076593Triticum turgidumBrassica juncea59.854.2181.42296forward
CNT30263540Triticum turgidumBrassica rapa53.9441.483.15267forward
CNT3016767Triticum turgidumZea mays88.0857.6784.17436forward
CNT30605857Triticum turgidumGossypium raimondii70.7143.1680.57350forward
CNT30216750Triticum turgidumKalanchoe fedtschenkoi39.840.281.22197forward
CNT3067990Triticum turgidumLeersia perrieri75.5698.1684.76374forward
CNT30713436Triticum turgidumMalus domestica golden36.1655.5983.24179forward
CNT30688162Triticum turgidumTriticum urartu10073.6692.53495forward
CNT30341751Triticum turgidumEragrostis tef84.4486.3686.12418forward
CNT30366537Triticum turgidumSorghum bicolor92.9352.7585.22460forward
CNT30620243Triticum turgidumCajanus cajan42.8363.8682.08212forward
CNT30354836Triticum turgidumLactuca sativa57.9849.7481.53287forward
CNT30154791Triticum turgidumPrunus persica51.7232.9581.25256forward
CNT30641843Triticum turgidumCannabis sativa56.7758.4280.78281forward
CNT3027877Triticum turgidumTheobroma cacao31.3139.2485.16155forward
CNT3051605Triticum turgidumAmborella trichopoda83.6462.4479.23414forward
CNT30109704Triticum turgidumOryza longistaminata47.6842.4586.02236forward
CNT30121127Triticum turgidumCitrus clementina48.8929.6682.23242forward
CNT30149986Triticum turgidumBrachypodium distachyon93.1351.3990.24461forward
CNT30103004Triticum turgidumOryza rufipogon99.649.4585.6493forward
CNT30577473Triticum turgidumOryza barthii55.7650.6487.32276forward
CNT30584594Triticum turgidumEchinochloa crusgalli85.8668.7786.12425forward
CNT30497905Triticum turgidumDigitaria exilis95.1552.1685.14471forward
CNT30176441Triticum turgidumVigna angularis61.8250.5882.03306forward
CNT30558075Triticum turgidumPanicum hallii95.1559.785.56471forward
CNT30551544Triticum turgidumOryza brachyantha88.0862.7383.26436forward

Expression of CNT30400271

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MMATLGCKMATSGCMQEMLGCMLARSDYKPVMLDYSSAMWGYSLVMLGCSSEMWGCS*

>peptide 2 (40 aa)
EKSDCTGSSSLDCLENKHVKDCTWPKKDCSSVKWGCSSVK*

Sequence

>CNT30400271
GAGAAGTCTGACTGTACGGGCTCATCATCCTTGGACTGCTTGGAGAATAAGCATGTGAAGGACTGTACTTGGCCGAAGAAGGATTGTAGCTCGGTGAAGT
GGGGCTGTAGTTCGGTGAAGTAGGGCTGTAGCTCGGTGACGTCGGGCTGTAACCAGGCGATGTAGGGCTGTATGCAGGCGATGTAGGGCTGTATGAGGGG
GATGTCGGGCTGTATGAGGGTGACGTGGGGCTGTATGAGGGTGATGTCGGGCTGTACGAGGGAGAAGTAGGGCTGTATGATGGCGACGTTGGGCTGTAAG
ATGGCGACGTCGGGCTGTATGCAGGAGATGTTGGGCTGTATGCTGGCGAGGTCGGACTATAAACCGGTGATGTTGGACTATAGCTCGGCGATGTGGGGCT
ATAGCTTGGTGATGTTGGGCTGTAGCTCGGAGATGTGGGGCTGTAGCTAGGAGATGTGGGGCTGTAGCTCGGGGATGTTGGCGAGTATGATGGAC