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Detailed information on CNT30315993


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSTUT001430, E-value = 1e-61

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549216Corylus avellanaIpomoea triloba35.8963.2780360forward
CNT30377104Corylus avellanaArabidopsis thaliana39.0855.5284.18392forward
CNT30500604Corylus avellanaCoffea canephora54.5488.9481.54547forward
CNT30616511Corylus avellanaSesamum indicum42.8765.8581.63430forward
CNT30269232Corylus avellanaChenopodium quinoa56.4388.9980.74566forward
CNT30727661Corylus avellanaCorchorus capsularis49.9580.0381.84501forward
CNT30378927Corylus avellanaManihot esculenta49.1579.6480.12493forward
CNT30403468Corylus avellanaBeta vulgaris39.0850.6580.36392forward
CNT30628702Corylus avellanaVigna unguiculata58.0384.9679.21582forward
CNT3042435Corylus avellanaPrunus dulcis49.3571.5382.63495forward
CNT30559890Corylus avellanaActinidia chinensis48.9571.8982.89491forward
CNT30591949Corylus avellanaMusa acuminata34.671.480.4347forward
CNT30508904Corylus avellanaSolanum lycopersicum38.3862.381.82385forward
CNT30145737Corylus avellanaMedicago truncatula30.715083.77308forward
CNT30312353Corylus avellanaCamelina sativa36.9990.4981.4371forward
CNT3062262Corylus avellanaArabidopsis lyrata39.0871.5382.91392forward
CNT3079663Corylus avellanaBrassica juncea38.7873.1282.01389forward
CNT30468644Corylus avellanaSaccharum spontaneum28.0229.8680.78281forward
CNT30607743Corylus avellanaGossypium raimondii47.7670.9681479forward
CNT30216750Corylus avellanaKalanchoe fedtschenkoi45.3692.8680455forward
CNT30205386Corylus avellanaHelianthus annuus22.3331.3382.59224forward
CNT30713436Corylus avellanaMalus domestica golden30.5195.0382.35306forward
CNT30341751Corylus avellanaEragrostis tef26.2254.3483.65263forward
CNT30154742Corylus avellanaPrunus persica49.355982.83495forward
CNT30573870Corylus avellanaVitis vinifera48.9569.6581.06491forward
CNT30705868Corylus avellanaPrunus avium56.4353.381.98566forward
CNT3027877Corylus avellanaTheobroma cacao23.0358.4887.88231forward
CNT3035176Corylus avellanaCucumis melo40.4873.8283.5406forward
CNT30176441Corylus avellanaVigna angularis43.6772.481.28438forward
CNT30558075Corylus avellanaPanicum hallii27.4234.8584.73275forward
CNT30114394Corylus avellanaFicus carica27.9247.0686.07280forward
CNT30335475Corylus avellanaCynara cardunculus41.5832.180.82417forward
CNT3049385Corylus avellanaCucumis sativus42.2753.5484.2424forward

Expression of CNT30315993

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MSGTLGYTLERWGCTQGRWGCTQGRWGYTQG

>peptide 2 (39 aa)
MLQIVLKESKDQEHAADKIVNLPTGAVCWARRRIRWGCR*

>peptide 3 (57 aa)
MWGCMRVRLGCMKEKWDCKKVMWGCKMGKWGCMPVMWGCMLAKWGCMLGKWGCNLER*

Sequence

>CNT30315993
CCACAACATTAATTAAGACATTTTATCTGGACCAAACATGCAGTGCAACCCCTGATAGTCGCAAGCTGATCTAACTTGAAACCGACTTTTAGGTGTTCGG
AGAAGAAGATGAGAAAACTAAACAACTCCTCGGGGTTGTTTCTCCTTTAAAAAAACACCTAGACATAGAGGCAACTGCCTCAAGTTATTAGATGTTAACT
TCACAAACCAGTCAGTTATATAGCCCATTAAACAAGCAAGCAACTATTTAAAAACTGAGGCCCATAATCAGAAAGTTAAAAACAGAAACCATGCTACAAA
TAGTGCTGAAAGAGAGCAAAGACCAAGAACATGCTGCTGACAAAATAGTAAACTTACCTACTGGGGCTGTATGTTGGGCTAGAAGGAGAATAAGATGGGG
ATGTCGGTGAATATGACGGAGATGTAGGACTATATGGACTTGACGGTGACAATCTTGGACTACTTGGTGAGTATGCCAGTGAAGGGCTGTACTTCGCCGA
CTGAGGATTATAGCTAGGAGATGTTGGACTATAACTGGGTGAGGTTGGACTATACCCCGGAGATGTGGGGCTATAAGCTGGTGAGGTAGGGCTGTACGAG
GGAGATGTGGGGCTGTATGAGGGTGAGGTTGGGCTGTATGAAGGAGAAGTGGGACTGTAAGAAGGTGATGTGGGGCTGTAAGATGGGGAAGTGGGGCTGT
ATGCCGGTGATGTGGGGCTGTATGCTGGCGAAGTGGGGCTGTATGCTGGGGAAGTGGGGCTGTAACTTGGAGAGGTAGGGCTGTAAGTTGGAGATGTTGG
GCTGTAGCTGGGAGAGGTTGGGCTGTAGCTGGGAGAGGTAGGCGAGTAAGATGGACTTGTAGGAGAATAGGCAGGACTGGTTGGGCTATAGCCCGGAGAA
CTAGGGCTATATGTCGGGGACGTTGGGCTATACCCTGGAGAGGTGGGGCTGTACCCAGGGGAGGTGGGGCTGTACCCAGGGGAGGTGGGGCTATACCCAG
GGG