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Detailed information on CNT30376704


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000067, E-value = 3e-67

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549101Arabidopsis thalianaIpomoea triloba32.9944.0781.54260forward
CNT30616482Arabidopsis thalianaSesamum indicum74.3738.4381.4586forward
CNT30489068Arabidopsis thalianaOlea europaea50.8981.1781.05401forward
CNT30234460Arabidopsis thalianaBrassica oleracea90.61101.5685.85714forward
CNT30554779Arabidopsis thalianaOryza glaberrima40.7434.3381321forward
CNT3062262Arabidopsis thalianaArabidopsis lyrata69.5410097.26548forward
CNT3079663Arabidopsis thalianaBrassica juncea67.1399.4490.36529forward
CNT30468644Arabidopsis thalianaSaccharum spontaneum38.0731.8882.67300forward
CNT30216750Arabidopsis thalianaKalanchoe fedtschenkoi48.2277.5579.74380forward
CNT3067990Arabidopsis thalianaLeersia perrieri42.2687.481.38333forward
CNT30688162Arabidopsis thalianaTriticum urartu39.0945.8382.14308forward
CNT30476941Arabidopsis thalianaArabidopsis halleri10098.3896.45788forward
CNT30370935Arabidopsis thalianaOryza glumipatula32.6126.5582.1257forward
CNT30154777Arabidopsis thalianaPrunus persica97.9796.580.7772forward
CNT30573855Arabidopsis thalianaVitis vinifera62.4481.7381.71492forward
CNT30584450Arabidopsis thalianaEchinochloa crusgalli44.0446.3381.56347forward
CNT30497833Arabidopsis thalianaDigitaria exilis44.2939.5783.09349forward
CNT30558075Arabidopsis thalianaPanicum hallii28.8128.7783.7227forward
CNT30551544Arabidopsis thalianaOryza brachyantha39.5944.8982.37312forward

Expression of CNT30376704

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MLGCKKVKLGCKKERLGCMLVKLGCKQAKSGCNLGK*

>peptide 2 (56 aa)
MMDYILEKKKAKRPFHQHMEKTVHLTLGINAYLDLTGSLETSCLHGKECLTLVNEQE

Sequence

>CNT30376704
TGTAGTTGGGAGATGTAGGACTGTAGGGGCTAGCTGGTGATAGTCTTGCATTGCTAGGAGAGTAAGCTATAGATGGGCTATATTTAGCAGACTGAGGGTT
GTAGCTTGGAGACGTAGGACCGTAGCTTGGTGATGTTGGACTGTAACTTGGTGAAGTAGGGCTGTAGCCAGGAGATGTGGGGCTATATGCGGGTGAAGTA
GGGCTGTAAGACGGAGATGTTGGGCTGTAAGATGGTGAAGTAGGGCTGTAAGAAGGCGATGTTGGGCTGTAAGAAGGTGAAGTTGGGCTGTAAGAAGGAG
AGGTTGGGCTGTATGCTGGTGAAGTTGGGCTGTAAGCAGGCGAAGTCGGGCTGTAACTTGGGGAAGTAGGACTGTAGCTCGGAGATGTCGGGCTGTAGCT
TGGCGACGTTGGGCTATAGCTTGGAGACGTTGGGCTGTAGCTCGGAGAGGTAGGAGAATAGGAAGGACTTGTAGGAGAATAAGCAGGGCTTGTTGGGCTA
TAGCCAGGAGAACTGGGACTGTAGGTAGGCGAAGTTGGACTGTAACCGGGAGAAGTCGGGCTATATCCAGGCGAAGTTGGACTGTAACCGGGAGAAGTAG
GACTGTATCCAGGCGATGATGGACTATATCCTGGAGAAGAAGAAGGCGAAAAGGCCATTCCACCAACATATGGAGAAAACTGTGCATCTGACATTGGGGA
TAAACGCATATTTGGACTTAACAGGTAGTTTGGAGACATCATGCCTTCATGGTAAGGAGTGCCTGACACTGGTGAACGAGCAGGAGTC