CANTATAdb - search

Detailed information on CNT30577473

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30675703	Oryza barthii	Setaria viridis	40.73	79	81.98	222	forward
CNT30523536	Oryza barthii	Setaria italica	59.45	57.35	82.72	324	forward
CNT30640872	Oryza barthii	Nymphaea colorata	36.51	26.29	81.91	199	forward
CNT30536082	Oryza barthii	Eucalyptus grandis	40.55	37.33	81.45	221	forward
CNT30316024	Oryza barthii	Corylus avellana	53.76	36.4	81.23	293	forward
CNT30549216	Oryza barthii	Ipomoea triloba	54.31	52.02	81.42	296	forward
CNT30516897	Oryza barthii	Juglans regia	49.36	30.43	81.41	269	forward
CNT30377104	Oryza barthii	Arabidopsis thaliana	48.99	37.82	81.65	267	forward
CNT30500604	Oryza barthii	Coffea canephora	44.04	39.02	78.75	240	forward
CNT30616442	Oryza barthii	Sesamum indicum	50.46	26.44	81.09	275	forward
CNT30267761	Oryza barthii	Chenopodium quinoa	59.27	39.58	82.04	323	forward
CNT30403468	Oryza barthii	Beta vulgaris	32.84	23.13	82.12	179	forward
CNT30490956	Oryza barthii	Olea europaea	50.46	65.48	78.91	275	forward
CNT30506120	Oryza barthii	Nicotiana attenuata	47.89	44.62	81.23	261	forward
CNT30710467	Oryza barthii	Glycine max	43.85	33.06	82.85	239	forward
CNT3091192	Oryza barthii	Solanum tuberosum	50.46	39.68	81.45	275	forward
CNT30193210	Oryza barthii	Secale cereale	32.29	82.24	88.07	176	forward
CNT30304911	Oryza barthii	Triticum aestivum	57.25	52.17	86.54	312	forward
CNT30400271	Oryza barthii	Triticum turgidum	50.64	55.76	87.32	276	forward
CNT30235097	Oryza barthii	Brassica oleracea	39.45	26.84	83.26	215	forward
CNT30508722	Oryza barthii	Solanum lycopersicum	50.46	53.61	82.91	275	forward
CNT30554580	Oryza barthii	Oryza glaberrima	61.83	49.56	99.7	337	forward
CNT30145737	Oryza barthii	Medicago truncatula	47.89	42.37	81.61	261	forward
CNT30443444	Oryza barthii	Aegilops tauschii	57.61	33.73	83.76	314	forward
CNT30256655	Oryza barthii	Avena sativa	62.02	75.28	86.69	338	forward
CNT30668234	Oryza barthii	Triticum dicoccoides	30.64	28.4	91.62	167	forward
CNT30311681	Oryza barthii	Camelina sativa	46.61	35.38	82.68	254	forward
CNT3062262	Oryza barthii	Arabidopsis lyrata	43.3	43.07	81.36	236	forward
CNT3076593	Oryza barthii	Brassica juncea	30.28	30.22	84.85	165	forward
CNT30263459	Oryza barthii	Brassica rapa	49.91	50.28	82.35	272	forward
CNT30468674	Oryza barthii	Saccharum spontaneum	61.47	36.53	84.48	335	forward
CNT30141877	Oryza barthii	Lolium perenne	56.33	68.53	87.3	307	forward
CNT30605857	Oryza barthii	Gossypium raimondii	41.1	27.62	82.59	224	forward
CNT30216750	Oryza barthii	Kalanchoe fedtschenkoi	52.66	58.57	79.44	287	forward
CNT3067979	Oryza barthii	Leersia perrieri	40.55	61.39	89.14	221	forward
CNT30205103	Oryza barthii	Helianthus annuus	43.3	33.33	80.93	236	forward
CNT30625502	Oryza barthii	Daucus carota	51.19	34.28	79.21	279	forward
CNT30688162	Oryza barthii	Triticum urartu	54.5	44.2	86.87	297	forward
CNT30341749	Oryza barthii	Eragrostis tef	64.22	78.65	88.29	350	forward
CNT30476941	Oryza barthii	Arabidopsis halleri	48.81	33.21	81.95	266	forward
CNT30366979	Oryza barthii	Sorghum bicolor	61.47	54.83	84.18	335	forward
CNT30596739	Oryza barthii	Oryza meridionalis	100	83.85	99.27	545	forward
CNT30354661	Oryza barthii	Lactuca sativa	54.86	53.78	80.6	299	forward
CNT30370935	Oryza barthii	Oryza glumipatula	61.83	34.81	99.41	337	forward
CNT30410012	Oryza barthii	Papaver somniferum	57.61	82.63	78.98	314	forward
CNT3027877	Oryza barthii	Theobroma cacao	40.55	55.95	82.35	221	forward
CNT30109704	Oryza barthii	Oryza longistaminata	74.13	72.66	87.62	404	forward
CNT30121063	Oryza barthii	Citrus clementina	50.64	57.62	80.07	276	forward
CNT30149777	Oryza barthii	Brachypodium distachyon	57.25	33.88	86.54	312	forward
CNT30103004	Oryza barthii	Oryza rufipogon	57.43	31.39	97.76	313	forward
CNT30498009	Oryza barthii	Digitaria exilis	53.76	29.93	86.69	293	forward
CNT30558075	Oryza barthii	Panicum hallii	57.25	39.54	85.58	312	forward
CNT30551544	Oryza barthii	Oryza brachyantha	53.21	41.73	87.93	290	forward
CNT30114394	Oryza barthii	Ficus carica	25.69	23.53	82.86	140	forward
CNT30335475	Oryza barthii	Cynara cardunculus	51.19	21.48	81	279	forward

Expression of CNT30577473

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MQEMSDCMRVMSDCMRGKWGCKTEMLDCMMEMLGYMMVMWGCKMVMWGYKMVM*

>peptide 2 (53 aa)
VKSDYKGSALGCLESTRGKDCTWPKKDCSLVKLDCNLVKLGCSLEMSGCNQVM*

>peptide 3 (33 aa)
MMEKWDCSWVKQDYMMEKLGCILALDCIPEKMDC

Sequence

>CNT30577473
GTGAAGTCTGACTATAAGGGCTCAGCCTTGGGCTGCTTGGAGAGTACGCGTGGGAAGGACTGTACTTGGCCGAAGAAGGATTGTAGCTTGGTGAAGTTGG
ACTGTAATTTGGTGAAGTTGGGCTGTAGCTTGGAGATGTCGGGCTGTAACCAGGTGATGTAGGGCTGTATGCAGGAGATGTCGGACTGTATGAGGGTGAT
GTCGGACTGTATGAGGGGGAAGTGGGGCTGTAAGACGGAGATGTTGGACTGTATGATGGAGATGTTGGGCTATATGATGGTGATGTGGGGCTGTAAGATG
GTGATGTGGGGCTATAAGATGGTGATGTAGGGCTGTAGCTTGGAGATGTTGGCGAGTATGATGGACTGGTAGGCGAGTATGACGGACTGGTAGGTGAGTA
TGATGGACTTGTTGGCGAGTAAGTAGGAGAGCCAGGTGTATATGATGGAGAAGTGGGACTGTAGCTGGGTGAAGCAGGACTATATGATGGAGAAGTTGGG
CTGTATCCTGGCCCTGGACTGTATACCGGAGAAGATGGACTGTAA