« Back to Vigna radiata search


Detailed information on CNT3087851


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000067, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640872Vigna radiataNymphaea colorata51.4262.0980.64470forward
CNT30316118Vigna radiataCorylus avellana56.6772.5582.24518forward
CNT30516792Vigna radiataJuglans regia77.3579.4481.9707forward
CNT30376158Vigna radiataArabidopsis thaliana76.3778.0879.51698forward
CNT30500730Vigna radiataCoffea canephora39.2841.5580.22359forward
CNT30616460Vigna radiataSesamum indicum70.1344.6780.34641forward
CNT30269286Vigna radiataChenopodium quinoa41.5857.8479.74380forward
CNT30727661Vigna radiataCorchorus capsularis45.6266.6180.82417forward
CNT30524942Vigna radiataPhaseolus vulgaris74.95102.0989.64685forward
CNT30628784Vigna radiataVigna unguiculata85.01102.190.99777forward
CNT30195835Vigna radiataPisum sativum20.5774.0290.43188forward
CNT30489068Vigna radiataOlea europaea44.868379.76410forward
CNT30506120Vigna radiataNicotiana attenuata39.9362.3982.74365forward
CNT30708216Vigna radiataGlycine max61.27100.1886.79560forward
CNT3042412Vigna radiataPrunus dulcis45.1955.7482.32413forward
CNT3091554Vigna radiataSolanum tuberosum49.4565.781.42452forward
CNT30559890Vigna radiataActinidia chinensis22.8730.685.17209forward
CNT30235097Vigna radiataBrassica oleracea70.4680.479.97644forward
CNT30508722Vigna radiataSolanum lycopersicum49.1287.5281.29449forward
CNT30554634Vigna radiataOryza glaberrima34.3537.9779.94314forward
CNT30312432Vigna radiataCamelina sativa37.6488.4382.27344forward
CNT3062262Vigna radiataArabidopsis lyrata31.0751.8281.69284forward
CNT3076593Vigna radiataBrassica juncea56.0293.7779.3512forward
CNT30263540Vigna radiataBrassica rapa72.87103.2677.63666forward
CNT30468644Vigna radiataSaccharum spontaneum37.3136.2480.35341forward
CNT3017802Vigna radiataZea mays31.0773.0182.75284forward
CNT30606053Vigna radiataGossypium raimondii39.6159.9385.36362forward
CNT30216750Vigna radiataKalanchoe fedtschenkoi18.2734.0883.83167forward
CNT3067990Vigna radiataLeersia perrieri25.1660.3781.74230forward
CNT30648253Vigna radiataRosa chinensis68.1693.478.33623forward
CNT30204941Vigna radiataHelianthus annuus23.0990.5681.04211forward
CNT30476941Vigna radiataArabidopsis halleri62.2571.0478.73569forward
CNT30620207Vigna radiataCajanus cajan36.9815.7392.9338forward
CNT30596736Vigna radiataOryza meridionalis20.5724.984.04188forward
CNT30355225Vigna radiataLactuca sativa32.7151.8280.6299forward
CNT30370935Vigna radiataOryza glumipatula28.1226.5582.49257forward
CNT30154712Vigna radiataPrunus persica68.3880.2381.6625forward
CNT30408809Vigna radiataPapaver somniferum40.2642.5981.79368forward
CNT30573870Vigna radiataVitis vinifera42.5655.1881.49389forward
CNT30705868Vigna radiataPrunus avium74.0763.7580.06677forward
CNT3028162Vigna radiataTheobroma cacao48.1478.4380.68440forward
CNT3051702Vigna radiataAmborella trichopoda64.8896.978.41593forward
CNT30120999Vigna radiataCitrus clementina72.6549.4879.82664forward
CNT30330867Vigna radiataDioscorea rotundata27.4634.7281.27251forward
CNT30103167Vigna radiataOryza rufipogon36.3238.3480.72332forward
CNT30577348Vigna radiataOryza barthii12.6945.1485.34116forward
CNT30497905Vigna radiataDigitaria exilis37.6438.180.52344forward
CNT30176441Vigna radiataVigna angularis64.9998.1890.57594forward
CNT30551544Vigna radiataOryza brachyantha23.1930.584.43212forward
CNT30335477Vigna radiataCynara cardunculus17.9443.1684.76164forward
CNT3049385Vigna radiataCucumis sativus49.1256.6980.62449forward

Expression of CNT3087851

Peptides detected in this lncRNA

>peptide 1 (32 aa)
VGDVGLYGLDGDNLGLLGEYANEGLYFADWGL*

>peptide 2 (33 aa)
LGMWDYMDLMETILDCLENMLTKDCTLLTGDCN*

>peptide 3 (46 aa)
MKVKWDCKQVKWGYRQVKLGCMQVKSGCSWEKSGYNWVMWGCSWVM*

>peptide 4 (52 aa)
MIWSSRYWRASRSHAKIKTVHITRQLELNGILQHLIIKIQCTFTCANRGKLT*

>peptide 5 (57 aa)
MWERSDCNLVMWDCSREMWDCTQAMMDYSLERMDCTQEMRWEKTPSHQHKVKTGHPT*

Sequence

>CNT3087851
GTTGGGGATGTGGGACTATATGGACTTGATGGAGACAATCTTGGACTGCTTGGAGAATATGCTAACGAAGGACTGTACTTTGCTGACTGGGGATTGTAAC
TAGGGGAAGTAGGACTATACGATGGGGAAGTAGGACTATACGATGGGGATGTTGGGCTATATGAGGGTGACGTAGGGCTGTATCCAGGTGAAGTGGGGCT
GTAAGCAGGGGAAGCAGGGCTATATGATGGGGAGGTAGGGCTGTAAGAGGGTGAAGTGGGGCTGTATGAAGGTGAAGTGGGACTGTAAGCAGGTGAAGTG
GGGCTATAGGCAGGTGAAGTTGGGCTGTATGCAGGTGAAGTCGGGCTGTAGCTGGGAGAAGTCGGGCTATAACTGGGTGATGTGGGGCTGTAGCTGGGTG
ATGTAGGACTGTAGCTGGGTGATGTTGGGCTATAGCTGGGTGATGTGGGAGAGTAGGATGGACTGGTTGGTGAATAAGCCGGACTTGTAGGACTATATCC
TGGAGAACTAGGGCTATATGTGGGAGAGGTCGGACTGTAACCTGGTGATGTGGGACTGTAGCCGGGAGATGTGGGACTGTACCCAGGCGATGATGGACTA
TAGCCTGGAGAGGATGGACTGTACCCAGGAGATGAGGTGGGAGAAAACGCCATCCCACCAACATAAGGTGAAAACTGGGCATCCGACGTAGGAGACAGAC
GCAAATTTGGACTCAACAAATAACTAGGAGACATCAAGCCTTCATGATATGGAGTTCCAGATATTGGAGAGCGAGCAGGAGTCATGCCAAAATCAAGACC
GTCCATATAACTAGGCAGTTGGAGCTCAATGGCATTCTTCAGCATCTCATCATTAAGATACAATGCACATTCACCTGTGCCAATAGGGGCAAGCTGACCT
AGCATAATGTTTTC