« Back to Solanum tuberosum search


Detailed information on CNT3091613


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT000794, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30616399Solanum tuberosumSesamum indicum94.7110078.91716forward
CNT30269263Solanum tuberosumChenopodium quinoa47.8847.5181.49362forward
CNT30379051Solanum tuberosumManihot esculenta47.095182.58356forward
CNT30524932Solanum tuberosumPhaseolus vulgaris39.8164.1881.73301forward
CNT30628928Solanum tuberosumVigna unguiculata45.6369.1482.03345forward
CNT30506121Solanum tuberosumNicotiana attenuata54.198.7991.93409forward
CNT30307041Solanum tuberosumTriticum aestivum39.9556.3480.13302forward
CNT30400271Solanum tuberosumTriticum turgidum47.4972.5380.5359forward
CNT30559890Solanum tuberosumActinidia chinensis49.0754.3284.1371forward
CNT30554721Solanum tuberosumOryza glaberrima47.0938.0780.34356forward
CNT3062262Solanum tuberosumArabidopsis lyrata54.2374.8280.49410forward
CNT3079663Solanum tuberosumBrassica juncea46.365.7982350forward
CNT30607906Solanum tuberosumGossypium raimondii52.6569.5882.16398forward
CNT30205386Solanum tuberosumHelianthus annuus51.1954.1380.62387forward
CNT30687113Solanum tuberosumTriticum urartu53.8476.579.12407forward
CNT30350936Solanum tuberosumEragrostis tef47.4978.979.94359forward
CNT30366857Solanum tuberosumSorghum bicolor38.7629.8480.2293forward
CNT30354623Solanum tuberosumLactuca sativa38.3645.2479.66290forward
CNT30573925Solanum tuberosumVitis vinifera81.6175.4380.39617forward
CNT3035176Solanum tuberosumCucumis melo47.8865.8280.11362forward
CNT30330867Solanum tuberosumDioscorea rotundata39.2941.0880.47297forward
CNT30584450Solanum tuberosumEchinochloa crusgalli50.2650.7380.53380forward
CNT30497833Solanum tuberosumDigitaria exilis47.0940.3680.06356forward
CNT30176441Solanum tuberosumVigna angularis52.7865.9580.95399forward
CNT30558075Solanum tuberosumPanicum hallii33.231.8182.47251forward
CNT30551544Solanum tuberosumOryza brachyantha49.8754.2482.49377forward

Expression of CNT3091613

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MQEKLDYMMEKSDYKRVRWGYMKVMWGCKKVKWGCKMAKWGCMPEKWGCRPEKWGCMPEK*

>peptide 2 (44 aa)
MLDYNWVMWVSMKDWLENMLDLSGCNQGMMGCNQGMMDCNQGMK*

Sequence

>CNT3091613
TGTAACTTGGAGATGACGGGCTGTATGGACTAGAAGGAGACAGCTTCGGGCTGGTTGGCGAATATGCAAGGGAGGGGCTGTATCTCGCCGAGGGATTGTA
ACTTGGTGATGTAGGACTGTAGGATGGTGATGTTGGGCTATAGCTGGGAGATGTTGGGCTGTAACCAGGGGAGGTAGGACTGTATGCAGGAGAAGTTGGA
CTATATGATGGAGAAGTCGGACTATAAGAGGGTGAGGTGGGGCTATATGAAGGTGATGTGGGGCTGTAAGAAGGTGAAGTGGGGCTGTAAGATGGCGAAG
TGGGGCTGTATGCCGGAGAAGTGGGGCTGTAGGCCGGAGAAGTGGGGCTGTATGCCGGAGAAGTAGGGCTGTAGCTAGGTGATGTTGGGCTATAGCTAGG
CGAGGTTGGGCTATAGCTTGGAGATGTTGGACTATAACTGGGTGATGTGGGTGAGTATGAAGGACTGGTTGGAGAATATGCTGGACTTGTCGGGCTGTAA
CCAGGGGATGATGGGCTGTAACCAGGGGATGATGGACTGTAACCAGGGGATGAAGTAGGAGAGAAAGCCATGCCACCCACATAAGGAGAAAATTGAGCAT
CTGTAATCGGTGACATCCGCATATTTGGGCTGAGCAAATAATTTGGAGACATCATTCCATCATGATACGGGGTTCCACTGATAGGTGAACGCCCAGGTGT
CATGCCAAATTCAAGACCACCTTCCATGTAGCTAGGTAATGGTATCTCAATAGCTT