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Detailed information on CNT30256659


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523536Avena sativaSetaria italica37.947.9687.08271forward
CNT30640872Avena sativaNymphaea colorata24.0622.7282.56172forward
CNT30536082Avena sativaEucalyptus grandis30.0736.3282.79215forward
CNT30316008Avena sativaCorylus avellana38.1841.7482.42273forward
CNT30516792Avena sativaJuglans regia43.9235.2881.53314forward
CNT30376525Avena sativaArabidopsis thaliana37.6235.1682.16269forward
CNT30500604Avena sativaCoffea canephora34.6940.3380.24248forward
CNT30616511Avena sativaSesamum indicum43.3647.4779.68310forward
CNT30269263Avena sativaChenopodium quinoa45.5942.7883.13326forward
CNT30727660Avena sativaCorchorus capsularis38.8850.8279.5278forward
CNT30403782Avena sativaBeta vulgaris25.4543.5484.07182forward
CNT30524942Avena sativaPhaseolus vulgaris19.5820.8684.29140forward
CNT30628927Avena sativaVigna unguiculata48.1161.4379.36344forward
CNT30195835Avena sativaPisum sativum19.5855.1285140forward
CNT30490956Avena sativaOlea europaea32.5955.4881.97233forward
CNT30710529Avena sativaGlycine max43.6455.3282.37312forward
CNT3042435Avena sativaPrunus dulcis38.0439.3182.35272forward
CNT3091361Avena sativaSolanum tuberosum30.4929.6683.03218forward
CNT30304911Avena sativaTriticum aestivum70.7784.6288.14506forward
CNT30400472Avena sativaTriticum turgidum67.4148.3587.76482forward
CNT30559890Avena sativaActinidia chinensis39.341.1480.78281forward
CNT3088022Avena sativaVigna radiata48.5380.3278.96347forward
CNT30234460Avena sativaBrassica oleracea36.7837.4180.61263forward
CNT30554634Avena sativaOryza glaberrima96.6483.5682.34691forward
CNT30145737Avena sativaMedicago truncatula43.085079.55308forward
CNT30442780Avena sativaAegilops tauschii71.1964.1986.84509forward
CNT30668234Avena sativaTriticum dicoccoides49.9360.7189.36357forward
CNT30312432Avena sativaCamelina sativa33.0160.6780.51236forward
CNT3062262Avena sativaArabidopsis lyrata37.6249.0981.04269forward
CNT3079663Avena sativaBrassica juncea37.25080.08266forward
CNT30263459Avena sativaBrassica rapa35.146.480.48251forward
CNT30468525Avena sativaSaccharum spontaneum66.8556.786.4478forward
CNT30608057Avena sativaGossypium raimondii40.9849.4183.28293forward
CNT3067990Avena sativaLeersia perrieri49.7993.4483.71356forward
CNT30688162Avena sativaTriticum urartu70.9175.4586.79507forward
CNT30350937Avena sativaEragrostis tef65.4584.6384.62468forward
CNT30476941Avena sativaArabidopsis halleri37.6233.5881.78269forward
CNT30620243Avena sativaCajanus cajan32.1769.2881.3230forward
CNT30354836Avena sativaLactuca sativa27.9734.6683200forward
CNT30370935Avena sativaOryza glumipatula98.0472.4285.02701forward
CNT30154777Avena sativaPrunus persica38.043482.35272forward
CNT30408809Avena sativaPapaver somniferum34.2728.3681.22245forward
CNT30573870Avena sativaVitis vinifera43.3643.9780.32310forward
CNT30705862Avena sativaPrunus avium38.0425.6181.25272forward
CNT3028162Avena sativaTheobroma cacao30.9139.3981.45221forward
CNT30121049Avena sativaCitrus clementina33.4322.0982.01239forward
CNT3035176Avena sativaCucumis melo43.7856.9179.23313forward
CNT30330867Avena sativaDioscorea rotundata41.1240.6679.93294forward
CNT30149777Avena sativaBrachypodium distachyon99.5877.3186.94712forward
CNT30103173Avena sativaOryza rufipogon98.0472.1982.31701forward
CNT30584443Avena sativaEchinochloa crusgalli80.9883.5581579forward
CNT30497905Avena sativaDigitaria exilis83.7866.3382.14599forward
CNT30551544Avena sativaOryza brachyantha66.5768.4982.77476forward
CNT3049385Avena sativaCucumis sativus66.8560.3578.66478forward

Expression of CNT30256659

Peptides detected in this lncRNA

>peptide 1 (56 aa)
SLEKSDYKGSSSLGCLESKHVKGCIWPKKDCSSVKLDCSSAKLGCSWETSGCSQAT*

>peptide 2 (46 aa)
MTEMWGCMTEMWGCMMATSGYTMATSGCKMVTSGCMQERSGYKLAM*

Sequence

>CNT30256659
GTAGTTTGGAGAAGTCTGACTATAAGGGCTCATCATCCTTGGGCTGCTTGGAGAGTAAGCATGTGAAGGGCTGTATTTGGCCGAAGAAGGATTGTAGCTC
GGTGAAGTTGGACTGTAGTTCGGCGAAGTTGGGCTGTAGCTGGGAGACGTCGGGCTGTAGCCAGGCGACGTAGGGCTGTATGCAGGGGATGTTGGGCTGT
ATGAGGGAGATGTAGGGCTATATGAGGGGGAGGTAGGGCTATATGAGGGAGAGGTAGGGCTGTATGACGGAGATGTGGGGCTGTATGACGGAGATGTGGG
GCTGTATGATGGCGACGTCGGGCTATACGATGGCGACGTCGGGCTGTAAGATGGTGACGTCGGGCTGTATGCAGGAGAGGTCGGGCTATAAACTGGCGAT
GTAGGACTGTAGCTCGGTGAAGTGGGACTGTAGCTCGGCGATGTGGGGCTGTAGCTGGGAGATGTAGGGCTGTAGCTGGGAGATGTAGGGCTGTAGCTGG
GAGATGTTGGTGAGTATGATGGGCTGGTCGGGGAATATGACGGGCTAGTAGGACTGTAGGAAGGAGAGCCTGGCGTATATGATGGAGAGGTGGGACTGTA
GCTGGGTGATGCAGGGCTGTATGATGGAGAAGTGGGGCTGTAACCTTGTCCTGGCCCTGGGCTGAACACTGGAGAAGATGGGCTGTAACCACCCCCAGAG
GATGGGCTGTAGTTT