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Detailed information on CNT30335475


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT000794, E-value = 5e-33

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523536Cynara cardunculusSetaria italica22.3251.3381.03290forward
CNT30536082Cynara cardunculusEucalyptus grandis19.7843.4181.71257forward
CNT30315993Cynara cardunculusCorylus avellana26.5634.481.74345forward
CNT30549166Cynara cardunculusIpomoea triloba21.8642.2680.28284forward
CNT30516792Cynara cardunculusJuglans regia27.7140.4581.67360forward
CNT30700558Cynara cardunculusQuercus lobata12.6360.7484.15164forward
CNT30377104Cynara cardunculusArabidopsis thaliana19.9436.6981.47259forward
CNT30500604Cynara cardunculusCoffea canephora17.8637.7280.6232forward
CNT30616515Cynara cardunculusSesamum indicum17.2433.2382.59224forward
CNT30269243Cynara cardunculusChenopodium quinoa27.8739.7482.6362forward
CNT30378927Cynara cardunculusManihot esculenta26.8756.3879.94349forward
CNT30403468Cynara cardunculusBeta vulgaris29.148.8484.39378forward
CNT30628902Cynara cardunculusVigna unguiculata18.6354.6380.99242forward
CNT30489027Cynara cardunculusOlea europaea10.8540.7586.52141forward
CNT30506121Cynara cardunculusNicotiana attenuata13.3241.7987.86173forward
CNT3091337Cynara cardunculusSolanum tuberosum22.3235.5481.03290forward
CNT30304911Cynara cardunculusTriticum aestivum23.7151.5184.09308forward
CNT30400472Cynara cardunculusTriticum turgidum25.5633.383.43332forward
CNT30559890Cynara cardunculusActinidia chinensis27.2551.8379.94354forward
CNT3088002Cynara cardunculusVigna radiata18.6345.6680.58242forward
CNT30508904Cynara cardunculusSolanum lycopersicum22.5647.4181.57293forward
CNT30554580Cynara cardunculusOryza glaberrima22.5643.0981.57293forward
CNT30443444Cynara cardunculusAegilops tauschii24.7934.5981.99322forward
CNT30256655Cynara cardunculusAvena sativa24.6371.2782.5320forward
CNT30311681Cynara cardunculusCamelina sativa21.2538.4481.16276forward
CNT3062262Cynara cardunculusArabidopsis lyrata19.9447.2680.69259forward
CNT30468540Cynara cardunculusSaccharum spontaneum23.435.182.89304forward
CNT30140910Cynara cardunculusLolium perenne25.7993.8480.9335forward
CNT3016767Cynara cardunculusZea mays21.7937.4383.39283forward
CNT30608057Cynara cardunculusGossypium raimondii26.7158.5280.98347forward
CNT30216750Cynara cardunculusKalanchoe fedtschenkoi23.4862.2481.31305forward
CNT3067990Cynara cardunculusLeersia perrieri19.466.1483.33252forward
CNT30205421Cynara cardunculusHelianthus annuus29.9572.9888.43389forward
CNT30713436Cynara cardunculusMalus domestica golden13.6354.9782.49177forward
CNT30625502Cynara cardunculusDaucus carota26.0241.5282.54338forward
CNT30688162Cynara cardunculusTriticum urartu21.441.3784.53278forward
CNT30341749Cynara cardunculusEragrostis tef21.4862.783.51279forward
CNT30476941Cynara cardunculusArabidopsis halleri19.9432.3381.47259forward
CNT30596736Cynara cardunculusOryza meridionalis22.5638.8181.91293forward
CNT30354836Cynara cardunculusLactuca sativa27.0260.8384.62351forward
CNT30370935Cynara cardunculusOryza glumipatula22.5630.2781.57293forward
CNT30154742Cynara cardunculusPrunus persica22.7935.2880.74296forward
CNT30408809Cynara cardunculusPapaver somniferum26.0239.1281.95338forward
CNT30574023Cynara cardunculusVitis vinifera26.9462.9582.57350forward
CNT3027877Cynara cardunculusTheobroma cacao20.4867.3481.58266forward
CNT30109704Cynara cardunculusOryza longistaminata18.1742.4582.2236forward
CNT30121168Cynara cardunculusCitrus clementina31.8738.9882.13414forward
CNT3035176Cynara cardunculusCucumis melo31.5674.5579.27410forward
CNT30330867Cynara cardunculusDioscorea rotundata14.726.4284.29191forward
CNT30149777Cynara cardunculusBrachypodium distachyon24.6334.7482.81320forward
CNT30103004Cynara cardunculusOryza rufipogon20.0226.0881.92260forward
CNT30577473Cynara cardunculusOryza barthii21.4851.1981279forward
CNT30584594Cynara cardunculusEchinochloa crusgalli20.0242.0783.46260forward
CNT30497905Cynara cardunculusDigitaria exilis22.7932.7882.09296forward
CNT30176441Cynara cardunculusVigna angularis18.634080.99242forward
CNT30558075Cynara cardunculusPanicum hallii24.6340.5681.88320forward
CNT30551544Cynara cardunculusOryza brachyantha18.0933.8183.83235forward
CNT3049544Cynara cardunculusCucumis sativus29.0247.0780.11377forward

Expression of CNT30335475

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MMGRWGCMMARWGCMMVRWGCTMARWGCTMARWGCMMARWGCMLVRWGCRQETLGCN*

>peptide 2 (38 aa)
MTKYKRQYNLNRLLCNPKGWPHVRFPQALQVTLLAGRI*

>peptide 3 (33 aa)
MWVSNSERLGSSWEMWGSSWEMWGSSWERWGSR*

>peptide 4 (38 aa)
MADTTVPEKNAVMPVKLLYEICSIVKHKIYRCTCWDCM*

>peptide 5 (36 aa)
MPSNKSTIEKKAKLSTDSENISKQYTSERRDWHWYL*

Sequence

>CNT30335475
CTGCAGAAACACACAGATATCAATAGTGCCAAGATACAATTAAAATGAGGGTATGAACCTCACTTATGTTTTGATAATATGCATCAAAAAGGTATTGCCT
CCACTTAAAAATAATTGAAAACTAGATAGGCAATGCTAAAATAATGACAAAATATAAGAGACAATATAACCTAAATAGGCTGCTATGCAACCCTAAAGGT
TGGCCTCATGTTAGATTCCCCCAAGCTTTGCAGGTCACCCTGCTGGCAGGAAGAATCTAAAGTTTGTCCAGGCTGAATGGAGTGGTGCTTTATGAACCAC
ATCAACTAGTTAAACAAAAGATGGCAGATACCACAGTTCCAGAAAAAAACGCTGTTATGCCAGTTAAACTGCTTTATGAGATTTGCAGTATAGTGAAGCA
CAAGATATATAGATGTACCTGCTGGGACTGTATGTAGGGCTTGAAGGAGAATAAGATGGAGACGTTGGAGAATATGATGGCGATGTGGGACTGCAAAAAG
GAAGTTCACAACATTTAAAATTATAGTGAGGTAGGAACCACCTGTAAGACCTATGCCAAGTAACAAATCAACTATAGAAAAGAAAGCCAAGTTATCAACC
GACTCAGAGAACATAAGCAAGCAGTACACTTCAGAGAGAAGAGATTGGCACTGGTACCTGTAGTTCGGCGATGTAGGGCTATATGGACTTGAAGGCGATA
GTCTTGGACTACTAGGAGAATAAGCCAGTGACGGGCTGTACTTGGCTGATGACGGATTATAGCTTGGTGAGGTTGGACTGTAGCTAGGTGAAGTAGGACT
GTAGCTAGGTGAAGTAGGACTGTAGCCAGGGGAAGTAGGGCTGTAAGCAGGTGAGGTGGGGCTGTATGATGGGGAGGTGGGGCTGTATGATGGCGAGGTG
GGGCTGTATGATGGTGAGGTGGGGCTGTACGATGGCGAGGTGGGGCTGTACGATGGCGAGGTGGGGCTGTATGATGGCGAGGTGGGGCTGTATGCTGGTG
AGGTGGGGCTGTAGGCAGGAGACGTTGGGCTGTAACTAGGCGATGTGGGTGAGTAACTCGGAGAGGTTGGGGAGTAGCTGGGAGATGTGGGGGAGTAGCT
GGGAGATGTGGGGGAGTAGCTGGGAGAGGTGGGGGAGTAGGTAGGACTGGTTGGACTATAACCAGGCGAACTTGGACTGTATGTTGGCGAGGTCGGACTA
TAACCAGGTGATGTAGGACTATATCCAGGAGAGGTCGGGCTATAGCCGGGTGAGGTAGGGCTATAGCCAGGAGATGAAGGGCTGTATCCTGGAGAAGAC