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Detailed information on CNT30523536


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675703Setaria italicaSetaria viridis45.8492.1791.12259forward
CNT30640872Setaria italicaNymphaea colorata63.5447.4279.39359forward
CNT30536082Setaria italicaEucalyptus grandis65.6662.6780.05371forward
CNT30549166Setaria italicaIpomoea triloba48.6740.9280275forward
CNT30700805Setaria italicaQuercus lobata43.8981.8581.85248forward
CNT30376379Setaria italicaArabidopsis thaliana58.2344.2281.46329forward
CNT30500730Setaria italicaCoffea canephora62.4840.8679.89353forward
CNT30616442Setaria italicaSesamum indicum58.7631.9280.72332forward
CNT30267761Setaria italicaChenopodium quinoa72.5750.2581.46410forward
CNT3021339Setaria italicaCitrullus lanatus46.1941.1780.46261forward
CNT30403468Setaria italicaBeta vulgaris51.3337.4780290forward
CNT30524942Setaria italicaPhaseolus vulgaris55.446.6580.19313forward
CNT30628784Setaria italicaVigna unguiculata55.441.1382.43313forward
CNT30490956Setaria italicaOlea europaea60.3581.1978.89341forward
CNT30506119Setaria italicaNicotiana attenuata36.9952.3882.78209forward
CNT30708121Setaria italicaGlycine max51.8644.1382.25293forward
CNT3042412Setaria italicaPrunus dulcis71.554.5280.2404forward
CNT3091192Setaria italicaSolanum tuberosum63.0151.3779.78356forward
CNT30304911Setaria italicaTriticum aestivum50.847.9984.67287forward
CNT30400472Setaria italicaTriticum turgidum44.7825.3886.56253forward
CNT30559586Setaria italicaActinidia chinensis61.9543.3780350forward
CNT30591858Setaria italicaMusa acuminata54.1660.3679.74306forward
CNT3088022Setaria italicaVigna radiata53.4569.9181.79302forward
CNT30235097Setaria italicaBrassica oleracea61.9543.780350forward
CNT30508722Setaria italicaSolanum lycopersicum56.6462.3880.62320forward
CNT30554634Setaria italicaOryza glaberrima67.4346.0781.1381forward
CNT30442780Setaria italicaAegilops tauschii76.1154.2281.4430forward
CNT30256659Setaria italicaAvena sativa47.9637.987.08271forward
CNT30312227Setaria italicaCamelina sativa67.6190.5281.68382forward
CNT3062262Setaria italicaArabidopsis lyrata41.7743.0781.78236forward
CNT3079663Setaria italicaBrassica juncea58.2361.8480.24329forward
CNT30263459Setaria italicaBrassica rapa61.9564.779.71350forward
CNT30140910Setaria italicaLolium perenne61.9598.0483.71350forward
CNT30605857Setaria italicaGossypium raimondii44.4230.9582.07251forward
CNT30216752Setaria italicaKalanchoe fedtschenkoi29.5636.0782.63167forward
CNT3067990Setaria italicaLeersia perrieri38.5857.2285.32218forward
CNT30648253Setaria italicaRosa chinensis51.3343.4881.72290forward
CNT30205386Setaria italicaHelianthus annuus69.3854.8379.59392forward
CNT30713436Setaria italicaMalus domestica golden34.8761.1881.73197forward
CNT30625547Setaria italicaDaucus carota53.9829.3879.34305forward
CNT30688491Setaria italicaTriticum urartu75.7510083.41428forward
CNT30341750Setaria italicaEragrostis tef98.05102.2183.94554forward
CNT30476914Setaria italicaArabidopsis halleri56.1156.6181.39317forward
CNT30366570Setaria italicaSorghum bicolor98.4190.8589.03556forward
CNT30620243Setaria italicaCajanus cajan36.4662.0581.55206forward
CNT30596739Setaria italicaOryza meridionalis60.8852.9282.56344forward
CNT30355182Setaria italicaLactuca sativa48.1438.8681.25272forward
CNT30370935Setaria italicaOryza glumipatula50.9729.7582.99288forward
CNT30154777Setaria italicaPrunus persica68.8548.6280.46389forward
CNT30410012Setaria italicaPapaver somniferum50.0974.4780.21283forward
CNT30574166Setaria italicaVitis vinifera68.8590.6879.43389forward
CNT30705868Setaria italicaPrunus avium71.538.0479.7404forward
CNT30642025Setaria italicaCannabis sativa46.3751.0780.53262forward
CNT3028162Setaria italicaTheobroma cacao57.1757.5882.04323forward
CNT30109704Setaria italicaOryza longistaminata41.2441.9182.4233forward
CNT3035176Setaria italicaCucumis melo67.4369.2780.05381forward
CNT30330867Setaria italicaDioscorea rotundata47.6137.2182.9269forward
CNT30150463Setaria italicaBrachypodium distachyon104.2567.0181.49589forward
CNT30103004Setaria italicaOryza rufipogon55.0431.1983.6311forward
CNT30577473Setaria italicaOryza barthii57.3559.4582.72324forward
CNT30551544Setaria italicaOryza brachyantha44.9636.5584.65254forward
CNT30335475Setaria italicaCynara cardunculus69.9130.4179.49395forward

Expression of CNT30523536

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MLGCNLEMWASMMDWWASKLDWLGNNSGL*

>peptide 2 (35 aa)
CSSERSDCMESSLDCLESKHAKGCIWLMKDCSSEK*

Sequence

>CNT30523536
CTGTAGTTCGGAGAGGTCTGACTGTATGGAGTCATCCTTGGACTGCTTGGAGAGTAAGCATGCGAAGGGCTGTATTTGGCTGATGAAGGATTGTAGCTCG
GAGAAGTAGGACTGTAGCTCGGAGATGTCGGGCTGTAACTTGGTGATGTTGGGCTGTATCCAGGCGAGGTAGGGCTGTATGCAGGTGATGTTGGGCTGTA
CGAGGGGGAGGTAGGACTGTATGATGGGGATGTAGGGCTGTATGAAGGAGATGTAGGGCTGTATGAAGGCGACGTAGGGCTGTAAGACGGGGATGTTGGG
CTATAAGAGGGGGATGTGGGGCTGTAGCTTGGTGATGTAGGACTATAGCTAGGAGATGTAGGGCTGTAGCTTGGTGATGTAGGACTGTAGCTAGGAGATG
TTGGGCTGTAACTTGGAGATGTGGGCGAGTATGATGGACTGGTGGGCGAGTAAGTTGGACTGGTTGGGGAATAATTCGGGCTTGTAGGACTGTAAGTGGG
AGAGCCAGGTGTATATGATGGTGAGGTGGGACTATAGCTTGGTGAAGCAGGGCTGTATGATGGAG