CANTATAdb - search

RNA-Seq libraries used within CANTATAdb 2.0: 1. Amborella_trichopoda 20 libraries 2. Ananas_comosus 25 libraries 3. Arabidopsis_lyrata 21 libraries 4. Arabidopsis_thaliana 72 libraries 5. Brachypodium_distachyon 24 libraries 6. Brassica_napus 24 libraries 7. Brassica_oleracea 26 libraries 8. Brassica_rapa 23 libraries 9. Chenopodium_quinoa 19 libraries 10. Chlamydomonas_reinhardtii 14 libraries 11. Chondrus_crispus 1 libraries 12. Corchorus_capsularis 25 libraries 13. Cucumis_sativus 28 libraries 14. Galdieria_sulphuraria 9 libraries 15. Glycine_max 36 libraries 16. Hordeum_vulgare 23 libraries 17. Leersia_perrieri 4 libraries 18. Malus_domestica 0 libraries 19. Manihot_esculenta 18 libraries 20. Medicago_truncatula 26 libraries 21. Musa_acuminata 22 libraries 22. Oryza_barthii 20 libraries 23. Oryza_brachyantha 4 libraries 24. Oryza_nivara 6 libraries 25. Oryza_punctata 5 libraries 26. Oryza_rufipogon 20 libraries 27. Oryza_sativa 30 libraries 28. Oryza_sativa_Japonica_Group 0 libraries 29. Physcomitrella_patens 0 libraries 30. Populus_trichocarpa 22 libraries 31. Prunus_persica 27 libraries 32. Selaginella_moellendorffii 16 libraries 33. Setaria_italica 30 libraries 34. Solanum_lycopersicum 52 libraries 35. Solanum_tuberosum 28 libraries 36. Sorghum_bicolor 23 libraries 37. Theobroma_cacao 21 libraries 38. Trifolium_pratense 10 libraries 39. Vitis_vinifera 36 libraries 40. Zea_mays 35 libraries

Amborella_trichopoda

No.	Accession number	Tissue type
1.	SRR5293270	10B\|10B
2.	SRR5293266	14A\|14A
3.	SRR5293278	1A\|1A
4.	SRR5293277	2AB\|2AB
5.	SRR5293275	5B\|5B
6.	SRR5293273	7B\|7B
7.	SRR5293272	8AB\|8AB
8.	SRR5293271	9A\|9A
9.	SRR15206986	Amb21\|Amb21
10.	SRR15206985	Amb26\|Amb26
11.	SRR9087794	Ir_525\|Amborella_trichopoda
12.	SRR5293265	AtrApMer1\|AtrApMer
13.	SRR5293260	AtrOroots-400bp\|AtrOroots-400bp
14.	SRR5293262	AtrYlvs-400bp\|AtrYlvs-400bp
15.	SRR17211485	AAAH\|Carpel_S5_6R3
16.	SRR17211482	AAAF\|Ovary_LS7R3
17.	SRR17211479	AAAE\|Ovule_LS7R3
18.	SRR17211478	AAAD\|StgCrest_LS7R1
19.	SRR17211486	AAAJ\|Tepal_S5_6R3
20.	SRR3309444	WPN\|WPN

Ananas_comosus

No.	Accession number	Tissue type
1.	SRR1165179	a comprehensive pineapple transcriptome\|pineapple
2.	SRR5816605	THE1\|Ac_HE_transcriptome_1
3.	SRR5816604	THE2\|Ac_HE_transcriptome_2
4.	SRR7663735	Sepal_3\|T06
5.	SRR7663728	Flower_disk_3\|T09
6.	SRR7663712	Ovule_1\|T19
7.	SRR7663711	Ovule_2\|T20
8.	SRR7663707	Ovule_3\|T21
9.	SRR7663708	Stamen_1\|T22
10.	SRR7663709	Style_1\|T23
11.	SRR7663710	Core_1\|T24
12.	SRR7663703	Core_2\|T25
13.	SRR7663705	Petal_1\|T27
14.	SRR7663701	Stem_2\|T29
15.	SRR7663723	Leaf_2\|T32
16.	SRR7663722	Leaf_3\|T33
17.	SRR7663721	Root_1\|T34
18.	SRR10090399	L05\|L05
19.	SRR10090398	L06\|L06
20.	SRR12346713	FIs-3\|fan-shaped inflorescence
21.	SRR12346714	FIs-2\|fan-shaped inflorescence
22.	SRR12346715	CIs-2\|fan-shaped inflorescence
23.	SRR19851142	29126962\|M31
24.	SRR19851140	29126964\|M33
25.	SRR19851139	29126965\|M41

Arabidopsis_lyrata

No.	Accession number	Tissue type
1.	SRR1868066	S94B\|S94B
2.	SRR1868067	S96B\|S96B
3.	SRR3020587	NA\|GSM1973825
4.	SRR3020591	NA\|GSM1973829
5.	SRR3020593	NA\|GSM1973831
6.	SRR3020605	NA\|GSM1973843
7.	SRR3020606	NA\|GSM1973844
8.	SRR3993765	AL_flower\|A_lyrata_flower
9.	SRR3993764	AL_leaf\|A_lyrata_leaf
10.	SRR3993767	AL_root\|A_lyrata_root
11.	SRR3993768	AL_silique\|A_lyrata_silique
12.	SRR3993766	AL_stem\|A_lyrata_stem
13.	SRR6053249	A. lyrata leaf_1_AGTCAA\|A._lyrata_leaf_untreated_1
14.	SRR6053251	A. lyrata leaf_2_AGTTCC\|A._lyrata_leaf_untreated_2
15.	SRR6053254	A. lyrata pistils non-pollinated_2_AGTTCC\|A._lyrata_mature_pistils_unpollinated_2
16.	SRR6053253	A. lyrata pistils non-pollinated_3_ATGTCA\|A._lyrata_mature_pistils_unpollinated_3
17.	SRR17709581	HighSite_GER_2285_RNA\|HighSite_GER_2285
18.	SRR17709597	LowSite_GER_2324_RNA\|LowSite_GER_2324
19.	SRR23013336	AlyrPC\|AlyrP
20.	SRR23013346	AlyrPA\|AlyrP
21.	SRR23013333	AlyrSC\|AlyrS

Arabidopsis_thaliana

No.	Accession number	Tissue type
1.	SRR15531384	At23\|GBC2
2.	SRR15531383	At24\|GBC3
3.	SRR16025771	VB311 (root_3) - Bulk RNA\|VB311 (root_3) - Bulk RNAseq
4.	SRR16575077	wip123456-rep1\|mutant_1
5.	SRR17110474	WT_replicate_1\|WT_replicate_1
6.	SRR17110473	WT_replicate_2\|WT_replicate_2
7.	SRR20084011	600965\|Col-0 BAP 3
8.	SRR20084007	600955\|ago10-1 mock 1
9.	SRR20084006	600963\|ago10-1 mock 2
10.	SRR21411879	I5R2\|I5R2
11.	SRR21411878	I5R3\|I5R3
12.	SRR21411877	CR1\|CR1
13.	SRR21411876	CR2\|CR2
14.	SRR21411875	CR3\|CR3
15.	SRR6784800	Col_30D_flower_rep_2\|Col_30D_flower_rep_2
16.	SRR6784799	Col_30D_flower_rep_3\|Col_30D_flower_rep_3
17.	SRR6784793	Col_30D_flower_rep_1\|Col_30D_flower_rep_1
18.	SRR8392713	NA\|GSM3537558
19.	SRR8392714	NA\|GSM3537559
20.	SRR17138755	M13\|M13
21.	SRR17138754	M15\|M15
22.	SRR21762734	E22-T2\|E22-T2
23.	SRR21762733	E7-T3\|E7-T3
24.	SRR21762730	W3-T1\|W3-T1
25.	SRR18441380	L1EFA072005_FBP_5_2\|OE1-2
26.	SRR18441379	L1EFA072006_FBP_5_3\|OE1-3
27.	SRR21930720	VDof1-1\|VDof1-1
28.	SRR21930719	VDof1-2\|VDof1-2
29.	SRR21930722	WT-1\|WT-1
30.	SRR21930721	WT-2\|WT-2
31.	SRR23873994	OLS1\|WT
32.	SRR25391303	FRAS220084280-2r\|181
33.	SRR25391302	FRAS220084281-2r\|182
34.	SRR23013329	AthStigA\|AthStig
35.	SRR23013343	AthStigC\|AthStig
36.	SRR23013344	AthStigB\|AthStig
37.	SRR23013330	AthPolC\|AthPol
38.	SRR23013331	AthPolB\|AthPol
39.	SRR23013332	AthPolA\|AthPol
40.	SRR22192755	GSM6710325\|GSM6710325
41.	SRR22192753	GSM6710327\|GSM6710327
42.	SRR8712960	T01\|T01
43.	SRR8712958	T03\|T03
44.	SRR23595726	embryo2\|Col-0-embryo-2
45.	SRR23595725	embryo3\|MBD3-embryo-1
46.	SRR23595724	embryo4\|MBD3-embryo-2
47.	SRR15931261	NA\|GSM5584982
48.	SRR15931263	NA\|GSM5584984
49.	SRR20998335	S_L_R1\|Salt treat_Leaf_Replicate1
50.	SRR20998334	C_S_R3\|Control_Shoot apex_Replicate3
51.	SRR24224582	WT3\|WT3
52.	SRR24224581	OE01\|OE01
53.	SRR24224580	OE02\|OE02
54.	SRR24224579	OE03\|OE03
55.	SRR14917397	sum2-1_complemented line_RNA-seq_rep1_20210623\|sum2-1_complemented line_RNA-seq_rep1_20210623
56.	SRR14917395	sum2-1_complemented line_RNA-seq_rep3_20210623\|sum2-1_complemented line_RNA-seq_rep3_20210623
57.	SRR15173307	4156_I\|cdfq Hypo-rep-3
58.	SRR15173301	4163_H\|cdfq Coty-rep-2
59.	SRR15173300	4163_I\|cdfq Coty-rep-3
60.	SRR15173299	4156_A\|Col-0 Hypo-rep-1
61.	SRR16539712	CRRA200000504-1a\|KO_22_3
62.	SRR16539709	CRRA200000507-1a\|WT_28_3
63.	SRR16539708	CRRA200000508-1a\|KO_28_1
64.	SRR19520231	LBD11OX-1_1\|LBD11OX-1
65.	SRR19520227	LBD11OX-2_1\|LBD11OX-2
66.	SRR11815669	iPLC_control_1\|iPLC
67.	SRR11815670	miR408_OE_3\|miR408OE
68.	SRR11815671	miR408_OE_2\|miR408OE
69.	SRR17407525	UH_N001\|Unaged_hsl1_1
70.	SRR17407524	UH_N002\|Unaged_hsl1_2
71.	SRR17407523	UH_N003\|Unaged_hsl1_3
72.	SRR17407522	AH_N001\|Aged_hsl1_1

Brachypodium_distachyon

No.	Accession number	Tissue type
1.	SRR6789272	WT4\|Bd21-3_WT
2.	SRR6789273	WT3\|Bd21-3_WT
3.	SRR10380965	C4\|Control
4.	SRR10380966	C3\|Control
5.	SRR3166985	Floral_Bud_2\|Floral_Bud_2
6.	SRR3170528	Floral_Bud_3\|Floral_Bud_3
7.	SRR13844641	NA\|GSM5130004
8.	SRR13844642	NA\|GSM5130005
9.	SRR13844645	NA\|GSM5130008
10.	SRR13844647	NA\|GSM5130010
11.	SRR13844649	NA\|GSM5130012
12.	SRR13844651	NA\|GSM5130014
13.	SRR13844652	NA\|GSM5130015
14.	SRR5578512	AHHXN\|Gp0176716
15.	SRR5578516	AHHXH\|Gp0176763
16.	SRR18694423	GXYCB\|Gp0489519
17.	SRR18694422	GXYCC\|Gp0489520
18.	SRR18694424	GXYCG\|Gp0489521
19.	SRR18694425	GXYCH\|Gp0489522
20.	SRR18694427	GXYCN\|Gp0489523
21.	SRR18694426	GXYCO\|Gp0489524
22.	SRR3170525	Leaf_2\|Leaf_2
23.	ERR10610857	Luc1_1_BotInst\|SAMEA7375532
24.	ERR10610860	Sig2_1_BotInst\|SAMEA7375535

Brassica_napus

No.	Accession number	Tissue type
1.	SRR6453874	2107_RNA-Seq\|2107
2.	SRR6453881	2130_RNA-Seq\|2130
3.	SRR6453877	2134_RNA-Seq\|2134
4.	SRR6453878	2135_RNA-Seq\|2135
5.	SRR6453885	2138_RNA-Seq\|2138
6.	SRR6453886	2139_RNA-Seq\|2139
7.	SRR6454057	3082_RNA-Seq\|3082
8.	SRR6454056	3085_RNA-Seq\|3085
9.	SRR6453920	3088_RNA-Seq\|3088
10.	SRR6453919	3089_RNA-Seq\|3089
11.	SRR10883107	ywf_petals_2\|"Brassica napus(ZS9)_petal
12.	SRR3571674	NA\|GSM2175150
13.	SRR3571675	NA\|GSM2175151
14.	SRR5139856	NA\|GSM2443529
15.	SRR5139857	NA\|GSM2443530
16.	SRR19154066	GSM6125626\|GSM6125626
17.	SRR19154065	GSM6125627\|GSM6125627
18.	ERR431516	AUP_IAOSW_r1\|SAMEA2358277
19.	ERR431524	AUP_PAOSW_r1\|SAMEA2358277
20.	SRR6785551	ID_T10\|T-10
21.	SRR6785552	ID_T11\|T-11
22.	SRR6785550	ID_T12\|T-12
23.	SRR5591717	NA\|Y35d-R3
24.	SRR5591722	NA\|Y42d-R1

Brassica_oleracea

No.	Accession number	Tissue type
1.	SRR6453890	2043_RNA-Seq\|2043
2.	SRR6453889	2044_RNA-Seq\|2044
3.	SRR6453892	2045_RNA-Seq\|2045
4.	SRR6453888	2047_RNA-Seq\|2047
5.	SRR6453887	2048_RNA-Seq\|2048
6.	SRR6454026	2145_RNA-Seq\|2145
7.	SRR4428723	83121B3\|83121B3
8.	SRR1104809	NA\|Brassica oleracea var. oleracea cotyledons
9.	SRR1104810	NA\|Brassica oleracea var. oleracea cotyledons
10.	SRR1104812	NA\|Brassica oleracea var. oleracea true leaves
11.	SRR1104813	NA\|Brassica oleracea var. oleracea true leaves
12.	SRR1032052	cabbage transcriptome\|Cabbage_flowerof102043_transcriptome
13.	SRR1032050	cabbage transcriptome\|Cabbage_leaf_transcriptome
14.	SRR630922	NA\|GSM1052958
15.	SRR630923	NA\|GSM1052959
16.	SRR630924	NA\|GSM1052960
17.	SRR630925	NA\|GSM1052961
18.	SRR630926	NA\|GSM1052962
19.	SRR630927	NA\|GSM1052963
20.	SRR630928	NA\|GSM1052964
21.	SRR1049400	NA\|GSM1289111
22.	SRR1049403	NA\|GSM1289114
23.	SRR1049404	NA\|GSM1289115
24.	SRR7092033	31B\|R_28D_C2
25.	SRR9993379	LCQ-04\|Sample 001
26.	SRR11183113	T3_2\|T3_2

Brassica_rapa

No.	Accession number	Tissue type
1.	SRR6411413	1409B-2\|1409B-2
2.	SRR6411412	1409B-3\|1409B-3
3.	SRR6454024	3002_RNA-Seq\|3002
4.	SRR6453978	3035_RNA-Seq\|3035
5.	SRR3280836	PI 633178\|B. rapa 011
6.	SRR3280814	PI 649178\|B. rapa 088
7.	SRR3280817	PI 662690\|B. rapa 090
8.	SRR3280818	PI 662687\|B. rapa 091
9.	SRR3280821	PI 597831\|B. rapa 094
10.	SRR3280823	PI 649194\|B. rapa 095
11.	SRR3280839	PI 662783\|B. rapa 101
12.	SRR3280840	G 30694\|B. rapa 103
13.	SRR8393202	B1-40D\|B1-40D
14.	SRR7224575	CK\|Brajh
15.	SRR5945850	Chiifu_leaf_RNA_rp2\|Chiifu_leaf_RNA_rp2
16.	SRR643621	NA\|GSM1059153
17.	SRR643625	NA\|GSM1059157
18.	SRR643626	NA\|GSM1059158
19.	SRR643628	NA\|GSM1059160
20.	SRR22442237	GSM6760847\|GSM6760847
21.	SRR13571472	MF_a1\|MF_a1
22.	SRR8393205	Y1-20D\|Y1-20D
23.	SRR8393201	Y2-30D\|Y2-30D

Chenopodium_quinoa

No.	Accession number	Tissue type
1.	SRR14475361	G72-2\|G72-2
2.	SRR14475360	G72-3\|G72-3
3.	SRR18324380	GSM5952451\|GSM5952451
4.	SRR18324381	GSM5952452\|GSM5952452
5.	SRR18324372	GSM5952456\|GSM5952456
6.	SRR18324373	GSM5952457\|GSM5952457
7.	SRR18324374	GSM5952458\|GSM5952458
8.	SRR18324376	GSM5952460\|GSM5952460
9.	SRR18324377	GSM5952461\|GSM5952461
10.	SRR18324371	GSM5952464\|GSM5952464
11.	SRR18324370	GSM5952465\|GSM5952465
12.	SRR22097321	S132\|Qingli.4_48h-2
13.	SRR22097320	S133\|Qingli.4_48h-3
14.	SRR22097319	S134\|Qingli.4_72h-1
15.	SRR19256694	A21208637a_FRAS210113165\|R7-2
16.	SRR19256693	A21208638a_FRAS210113166\|R7-3
17.	SRR19256692	A21202973a_FRAS210081196\|W6-1
18.	SRR14475362	seed-2\|seed-2
19.	SRR14475359	seed-3\|seed-3

Chlamydomonas_reinhardtii

No.	Accession number	Tissue type
1.	SRR2132425	NA\|GSM1835223
2.	SRR2132426	NA\|GSM1835224
3.	SRR2132427	NA\|GSM1835225
4.	ERR202876	1526628\|SAMEA1574021
5.	ERR202884	1526636\|SAMEA1574022
6.	ERR202883	1526635\|SAMEA1574023
7.	ERR202880	1526632\|SAMEA1574025
8.	ERR202881	1526633\|SAMEA1574028
9.	ERR202882	1526634\|SAMEA1574030
10.	ERR202879	1526631\|SAMEA1574034
11.	ERR202878	1526630\|SAMEA1574035
12.	ERR202875	1526627\|SAMEA1574040
13.	ERR202877	1526629\|SAMEA1574041
14.	ERR411598	58655\|SAMEA1931575

Chondrus_crispus

No.	Accession number	Tissue type
1.	ERR2041136	unspecified\|SAMEA104171180

Corchorus_capsularis

No.	Accession number	Tissue type
1.	SRR1585372	S1\|S1
2.	SRR1585373	S2\|S2
3.	SRR1867786	S3\|S3
4.	SRR5040290	NA\|BARJ_JUTE_CVL-1_Seedling_Before_Bolting_RNA-Seq
5.	SRR5040292	NA\|BARJ_JUTE_CVL-1_Seedling_Before_Bolting_RNA-Seq
6.	SRR5040301	NA\|BARJ_JUTE_CVL-1_Seedling_Before_Bolting_RNA-Seq
7.	SRR5046779	NA\|BARJ_JUTE_CVL-1_Seedlings_RNA-Seq
8.	SRR5046780	NA\|BARJ_JUTE_CVL-1_Seedlings_RNA-Seq
9.	SRR5046781	NA\|BARJ_JUTE_CVL-1_Seedlings_RNA-Seq
10.	SRR5040295	NA\|BARJ_JUTE_CVL-1_Young_Developing_Stem_RNA-Seq
11.	SRR5040296	NA\|BARJ_JUTE_CVL-1_Young_Developing_Stem_RNA-Seq
12.	SRR5040297	NA\|BARJ_JUTE_CVL-1_Young_Developing_Stem_RNA-Seq
13.	SRR5046773	NA\|BARJ_JUTE_CVL-1_FiberCell_RNA-Seq
14.	SRR5046774	NA\|BARJ_JUTE_CVL-1_FiberCell_RNA-Seq
15.	SRR5046775	NA\|BARJ_JUTE_CVL-1_FiberCell_RNA-Seq
16.	SRR5040289	NA\|BARJ_JUTE_CVL-1_Seedling_Before_Bolting_RNA-Seq
17.	SRR2089352	NA\|JuteTranscriptome
18.	SRR6429825	Jute drought\|YYC1
19.	SRR6429824	Jute drought\|YYC2
20.	SRR6429826	Jute drought\|YYC3
21.	SRR6429829	Jute drought\|YYD3
22.	SRR11912305	LFP1\|Yueyuan5hao
23.	SRR11912306	LVGP3\|Yueyuan5hao
24.	SRR11912307	LVGP2\|Yueyuan5hao
25.	SRR11912308	LVGP1\|Yueyuan5hao

Cucumis_sativus

No.	Accession number	Tissue type
1.	SRR351912	female\|female
2.	SRR351908	male\|male
3.	SRR351476	ovary\|ovary
4.	SRR351489	ovary_fertilized\|ovary_fertilized
5.	SRR351905	stem\|stem
6.	SRR351910	tendril\|teddril
7.	SRR351911	tendril_base\|tendril_base
8.	SRR351906	leaf\|CucumberLeaf
9.	SRR518991	cucumber_phloem\|cucumber_phloem
10.	SRR494475	cucumber_phloem\|cucumber_phloem
11.	SRR494480	cucumber_vascular\|cucumber_vascular
12.	SRR518994	cucumber_vascular\|cucumber_vascular
13.	SRR518995	cucumber_vascular\|cucumber_vascular
14.	SRR1612525	NA\|GSM1525525
15.	SRR1612526	NA\|GSM1525526
16.	SRR1612527	NA\|GSM1525527
17.	SRR1612528	NA\|GSM1525528
18.	SRR1612529	NA\|GSM1525529
19.	SRR1612530	NA\|GSM1525530
20.	SRR3207680	20\|S10
21.	SRR3207674	14\|S4
22.	SRR3207675	15\|S5
23.	SRR3207676	16\|S6
24.	SRR3207679	19\|S9
25.	SRR5312610	L_Mix\|Mix leaves
26.	SRR6821843	Cucumber_Control_R1\|Cucumber_Control_R1
27.	SRR6821842	Cucumber_Control_R2\|Cucumber_Control_R2
28.	SRR17072985	w-3\|W-3

Galdieria_sulphuraria

No.	Accession number	Tissue type
1.	SRR19915873	ERRA220009586-3a\|GLU_2
2.	SRR19915871	ERRA220009588-3a\|GLY_1
3.	SRR4450072	NA\|GSM2359926
4.	SRR4450073	NA\|GSM2359927
5.	SRR4450074	NA\|GSM2359928
6.	SRR4450075	NA\|GSM2359929
7.	SRR19760120	GASU108.79_IlluminaWTS\|Galdieria sulphuraria 108.79 E11
8.	SRR19915868	ERRA220009591-3a\|PHOT_1
9.	SRR19915867	ERRA220009592-3a\|PHOT_2

Glycine_max

No.	Accession number	Tissue type
1.	SRR21368880	Sample of -Fe\|-Fe
2.	SRR22071555	A-A-2\|A-A-2
3.	SRR14745992	A05-12-1\|A05-12-1
4.	SRR14745990	A07-12-2\|A07-12-2
5.	SRR14745986	A07-16\|A07-16
6.	SRR21368881	Sample of CK\|CK
7.	SRR1174232	NA\|Flower1
8.	SRR1174220	NA\|Flower4
9.	SRR1592287	NA\|GSM1515814
10.	SRR1636706	NA\|GSM1515814
11.	SRR1636707	NA\|GSM1515814
12.	SRR1636720	NA\|GSM1515821
13.	SRR1636721	NA\|GSM1515821
14.	SRR1592294	NA\|GSM1515821
15.	SRR22315823	GSM6735441\|GSM6735441
16.	SRR22315810	GSM6735453\|GSM6735453
17.	SRR22315799	GSM6735465\|GSM6735465
18.	SRR22105742	HF25_2b\|HF25-2-2
19.	SRR18532468	KO-1\|KO-1
20.	SRR18576533	KO-3\|KO-3
21.	SRR21368879	Sample of LN1\|LN1
22.	SRR1174230	NA\|Leafbud2
23.	SRR926170	NA\|M_SH_rep1
24.	SRR17461331	S869\|PHR1OE-R-1
25.	SRR17461330	S870\|PHR1OE-R-2
26.	SRR17461329	S871\|PHR1OE-R-3
27.	SRR1174205	NA\|Root
28.	SRR1174233	NA\|Seed5
29.	SRR1174231	NA\|Shoot_meristem
30.	SRR1174216	NA\|Stem2
31.	SRR18500300	WT-1\|WT-1
32.	SRR3475909	W2L_CGATGT: WR\|W_Root
33.	SRR3475912	W2R_AGTTCC: WR\|W_Root
34.	SRR3475915	W3R_ATGTCA: WR\|W_Root
35.	SRR1174223	NA\|pod2
36.	SRR1174224	NA\|pod3

Hordeum_vulgare

No.	Accession number	Tissue type
1.	SRR1032035	NA\|1044
2.	SRR10436261	107259\|107259
3.	SRR10436260	107261\|107261
4.	SRR1032036	NA\|561
5.	SRR5992406	CZW-5\|CZW-5
6.	SRR5992404	CZW-A\|CZW-A
7.	SRR5992405	CZW-B\|CZW-B
8.	SRR5992403	CZW-D\|CZW-D
9.	SRR10598344	GP_5DPG_C\|GP_5DPG_C
10.	SRR10598343	GP_5DPG_D\|GP_5DPG_D
11.	SRR14229115	Library for HTSR68\|HTSR68
12.	SRR14229114	Library for HTSR69\|HTSR69
13.	SRR14229112	Library for HTSR78\|HTSR78
14.	SRR14229111	Library for HTSR79\|HTSR79
15.	SRR1437687	Dulihuang Mixed\|Mixed tissues of hulless barley Dulihuang
16.	SRR5054865	SUB2126390\|RNA_seq_grain_3_DPA_replicate2
17.	SRR3138023	NA\|ZDM04815
18.	SRR3138024	NA\|ZDM04817
19.	SRR3138021	NA\|ZDM08841
20.	SRR3138022	NA\|ZDM08846
21.	SRR7817912	barley_S10\|barley_24h_S10
22.	SRR7817911	barley_S11\|barley_24h_S11
23.	SRR7817910	barley_S12\|barley_24h_S12

Leersia_perrieri

No.	Accession number	Tissue type
1.	SRR1171869	NA\|Leerisa perrieri leaf RNA seq
2.	SRR1171870	NA\|Leerisa perrieri panicle RNA seq
3.	SRR1171884	NA\|Leerisa perrieri root RNA seq
4.	SRR8565487	NA\|GSM3601777

Malus_domestica

No.	Accession number	Tissue type

Manihot_esculenta

No.	Accession number	Tissue type
1.	SRR3629856	NA\|GSM2187921
2.	SRR3629858	NA\|GSM2187922
3.	SRR3629859	NA\|GSM2187923
4.	SRR6748427	TE_URL_3\|TE_URL
5.	SRR6748426	TE_URL_2\|TE_URL
6.	SRR6748429	DI_URL_1\|DI_URL
7.	SRR8695270	8A-2\|8A-2
8.	SRR8695271	8A-3\|8A-3
9.	SRR10480848	T36\|Leaf_rep3
10.	SRR10480849	T135\|SC8002SR_rep3
11.	SRR10503229	MeSSVIi-1\|MeSSVIi-1
12.	SRR10503228	MeSSVIi-2\|MeSSVIi-2
13.	SRR15037369	SAA17\|SAA17
14.	SRR15037368	SAA18\|SAA18
15.	SRR21617342	D6-3\|D6-3
16.	SRR22163929	PL-2\|SC9 and PL transcriptome raw data
17.	SRR22163930	PL-1\|SC9 and PL transcriptome raw data
18.	SRR22704086	Ri-3w-1\|Ri-3w-1

Medicago_truncatula

No.	Accession number	Tissue type
1.	SRR3726836	TAOA\|1031118
2.	SRR3726837	TAOB\|1031118
3.	SRR3726838	TAOC\|1031118
4.	SRR13709445	Control-1-A1\|Control-1-A1
5.	SRR13709471	Control-3-A3\|Control-3-A3
6.	SRR13709470	Control-light-2D-1-E1\|Control-light-2D-1-E1
7.	SRR13489932	Control replicate 1 forward\|ENOD12 EV1/EM1F
8.	SRR17438081	NZGL01919AC-24\|F3
9.	SRR17438080	NZGL01919AC-2\|F4
10.	SRR17438079	NZGL01919AC-3\|F6
11.	SRR1979258	NA\|GSM1657858
12.	SRR1979303	NA\|GSM1658563
13.	SRR13299572	LLR-ZT20-1\|LLR-ZT20-1
14.	SRR13299573	LLS-ZT20-3\|LLS-ZT20-3
15.	SRR3997884	M-R+104\|M-R+104
16.	SRR3997886	M-R+109\|M-R+109
17.	SRR3997883	M-R-91\|M-R-91
18.	SRR8093910	HSRL000071\|Medicago hairy roots MKB KD
19.	SRR8093909	HSRL000072\|Medicago hairy roots TAX D
20.	SRR8786389	Mt_Nm_1\|Mt_Nm_1
21.	SRR9687491	SC702AL-A17-shoot-Inoculated-12hr-rep1\|SC702AL
22.	SRR9687493	SC751AL-A17-shoot-Control-0hr-rep3\|SC751AL
23.	SRR9687492	SC752AL-A17-shoot-Control-12hr-rep3\|SC752AL
24.	SRR7226326	HWI-ST1276-1\|W1
25.	SRR7226324	HWI-ST1276-3\|W3
26.	SRR11637996	plt1_S1\|plt1

Musa_acuminata

No.	Accession number	Tissue type
1.	SRR924324	Musa RNA\|Cavendish
2.	SRR1339507	Control RNA-Seq\|Control
3.	SRR5405141	Banana_leaf_RNA-seq_1:SZ060416C:RNA-Seq:paired:HiSeqXTen\|Banana_leaf_RNA-seq_1
4.	SRR5405140	Banana_leaf_RNA-seq_2:SZ060416C:RNA-Seq:paired:HiSeqXTen\|Banana_leaf_RNA-seq_2
5.	SRR6320438	Banana_leaf_adult_RNA-seq_1:PH094:RNA-seq:paired:HiSeqXTen\|Banana_leaf_adult_RNA-seq_1
6.	SRR6320440	Banana_leaf_old_RNA-seq_1:PH094:RNA-seq:paired:HiSeqXTen\|Banana_leaf_old_RNA-seq_1
7.	SRR6320439	Banana_leaf_young_RNA-seq_2:PH094:RNA-seq:paired:HiSeqXTen\|Banana_leaf_young_RNA-seq_2
8.	SRR6320442	Banana_peel_S2_RNA-seq_2:PH104:RNA-seq:paired:HiSeqXTen\|Banana_peel_S2_RNA-seq_2
9.	SRR6320445	Banana_peel_S3_RNA-seq_2:PH104:RNA-seq:paired:HiSeqXTen\|Banana_peel_S3_RNA-seq_2
10.	SRR6320444	Banana_pulp_S1_RNA-seq_2:PH094:RNA-seq:paired:HiSeqXTen\|Banana_pulp_S1_RNA-seq_2
11.	SRR6320447	Banana_pulp_S2_RNA-seq_2:PH094:RNA-seq:paired:HiSeqXTen\|Banana_pulp_S2_RNA-seq_2
12.	SRR6320446	Banana_pulp_S3_RNA-seq_2:PH094:RNA-seq:paired:HiSeqXTen\|Banana_pulp_S3_RNA-seq_2
13.	SRR6320531	Banana_pulp_S4_RNA-seq_2:PH094:RNA-seq:paired:HiSeqXTen\|Banana_pulp_S4_RNA-seq_2
14.	SRR7006128	HG-Control\|HG-Control
15.	SRR8661623	NKCK51h2\|NKCK51h2
16.	SRR8661622	NKCK51h3\|NKCK51h3
17.	SRR10260770	NA\|GSM4118638
18.	SRR10260774	NA\|GSM4118642
19.	SRR10424535	Foc4-3\|"CK-1
20.	SRR10424536	Foc4-2\|"CK-1
21.	SRR18752889	DK-1\|banana root DK_K1-1
22.	SRR24677732	Banana-BK\|BK

Oryza_barthii

No.	Accession number	Tissue type
1.	SRR1170742	NA\|Oryza barthii leaf RNAseq
2.	SRR1170744	NA\|Oryza barthii root RNAseq
3.	SRR1722291	NA\|Panicles transcriptome of Oryza barthii at booting stage
4.	SRR1722231	NA\|30-d-roots transcriptome of Oryza barthii
5.	SRR1722290	NA\|30-d-shoots transcriptome of Oryza barthii
6.	SRR1722292	NA\|Flag leaves transcriptome of Oryza barthii at booting stage
7.	SRR7445562	R_19\|W1411_tissue1
8.	SRR7445563	R_20\|W1411_tissue2
9.	SRR7445559	R_21\|W1411_tissue3
10.	SRR7445558	R_22\|W1411_tissue4
11.	SRR7445560	R_24\|W1411_tissue6
12.	SRR7445557	R_25\|W1411_tissue7
13.	SRR7445556	R_26\|W1411_tissue8
14.	SRR8517017	ob_PBM_3\|ob_PBM
15.	SRR8517019	ob_PBM_1\|ob_PBM
16.	SRR8517020	ob_PBM_2\|ob_PBM
17.	SRR8517023	ob_SM_2\|ob_SM
18.	SRR8517024	ob_SM_3\|ob_SM
19.	SRR8517018	ob_SM_1\|ob_SM
20.	SRR14132832	obar_leaf\|obar

Oryza_brachyantha

No.	Accession number	Tissue type
1.	DRR342058	NA\|SAMD00439246
2.	SRR351195	ORYcznTARAAPE\|IRGC101232
3.	SRR351196	ORYcznTBRAAPE\|IRGC101232
4.	SRR8565486	NA\|GSM3601776

Oryza_nivara

No.	Accession number	Tissue type
1.	SRR1722159	NA\|30-d-roots transcriptome of Oryza nivara
2.	SRR1722160	NA\|30-d-shoots transcriptome of Oryza nivara
3.	SRR1722161	NA\|Panicles transcriptome of Oryza nivara at booting stage
4.	SRR1722162	NA\|Flag leaves transcriptome of Oryza nivara at booting stage
5.	SRR14132831	oniv_leaf\|oniv
6.	SRR16192095	ZY054_1\|ZY054

Oryza_punctata

No.	Accession number	Tissue type
1.	SRR1171005	NA\|Oryza punctata leaf RNAseq
2.	SRR1171007	NA\|Oryza punctata root RNAseq
3.	SRR8565485	NA\|GSM3601775
4.	SRR16192093	ZY052_1\|ZY052
5.	DRR342056	NA\|SAMD00439244

Oryza_rufipogon

No.	Accession number	Tissue type
1.	SRR2443264	NA\|GSM1888197
2.	SRR3180884	DXWR_RNA_1\|Root sample from wild rice Oryza rufipogon
3.	SRR3182795	DXWR_RNA_2_leaf\|Leaf sample from wild rice Oryza rufipogon
4.	SRR7445580	R_3\|DXCWR_tissue3
5.	SRR7445581	R_4\|DXCWR_tissue4
6.	SRR7445578	R_1\|DXCWR_tissue1
7.	SRR7445577	R_8\|DXCWR_tissue8
8.	SRR7445576	R_7\|DXCWR_tissue7
9.	SRR7445575	R_6\|DXCWR_tissue6
10.	SRR7445574	R_5\|DXCWR_tissue5
11.	SRR7445573	R_10\|DXCWR_tissue10
12.	SRR7445572	R_9\|DXCWR_tissue9
13.	SRR7445579	R_2\|DXCWR_tissue2
14.	SRR13528770	2\|OR Seedlings
15.	SRR14163371	PY33-PF2\|PY33-PF2
16.	SRR18489151	17WRiceTA5-R2\|17 WRiceTA5-R2
17.	SRR18489152	16WRiceTA5-R1\|16 WRiceTA5-R1
18.	SRR21549257	OryzaLD8763\|OryzaLD8763
19.	SRR21549256	OryzaLD87121\|OryzaLD87121
20.	SRR21549255	OryzaLD87122\|OryzaLD87122

Oryza_sativa

No.	Accession number	Tissue type
1.	SRR22346703	LNLPLK_L3\|LNLPLK_L3
2.	SRR22346702	LNLPLK_R1\|LNLPLK_R1
3.	SRR22346701	LNLPLK_R2\|LNLPLK_R2
4.	SRR23947800	NIP_CK3\|NIP_CK3
5.	SRR23947799	NIP_SRB1\|NIP_SRB1
6.	SRR23755140	ZH11_2\|ZH11_2
7.	SRR23755139	ZH11_3\|ZH11_3
8.	DRR013723	NA\|SAMD00016340
9.	DRR013722	NA\|SAMD00016340
10.	ERR194168	unspecified\|SAMEA1573622
11.	SRR037723	Callus RNA-Seq data rep13\|GSM417517
12.	SRR037724	Callus RNA-Seq data rep14\|GSM417518
13.	SRR037734	booting panicle RNA-Seq data rep10\|GSM417528
14.	SRR037735	booting panicle RNA-Seq data rep11\|GSM417529
15.	SRR1785744	NA\|L-CK0-1
16.	SRR1785721	NA\|R-CK1-1
17.	SRR1972493	Y58S control treatment\|CY_AR1
18.	SRR2048572	GHH-1\|GHH
19.	SRR2048573	GHN-1\|GHN
20.	SRR4041950	dst ovary.2\|dst ovary.2
21.	SRR4041952	HY ovary.2\|HY ovary.2
22.	SRR4038218	HY pistil-1\|HY pistil-1
23.	SRR4041948	HY pistil.2\|HY pistil.2
24.	SRR4041954	HY stigma.2\|HY stigma.2
25.	SRR5130525	T1\|HR-12
26.	SRR24114108	root_fe_iro2_34\|root_fe_iro2_34
27.	SRR24114107	root_fe_iro2_35\|root_fe_iro2_35
28.	SRR24114106	root_fe_iro2_36\|root_fe_iro2_36
29.	SRR24114104	shoot_156_6\|shoot_156_6
30.	SRR24114103	shoot_iro2_7\|shoot_iro2_7

Oryza_sativa_Japonica_Group

No.	Accession number	Tissue type

Physcomitrella_patens

No.	Accession number	Tissue type

Populus_trichocarpa

No.	Accession number	Tissue type
1.	SRR5986234	CK-1L\|CK-1L
2.	SRR5986240	CK-1R\|CK-1R
3.	SRR5986237	CK-1S\|CK-1S
4.	SRR5986235	CK-2L\|CK-2L
5.	SRR5986241	CK-2R\|CK-2R
6.	SRR5986238	CK-2S\|CK-2S
7.	SRR5986236	CK-3L\|CK-3L
8.	SRR5986242	CK-3R\|CK-3R
9.	SRR5986239	CK-3S\|CK-3S
10.	SRR8474554	IN4-r2\|IN4-r2
11.	SRR11611375	PS_1\|Poplar_PS_1
12.	SRR11611374	PS_2\|Poplar_PS_2
13.	SRR8517643	RNase_R_treatment_RNA_Seq_rep2\|RNase_R_treatment_RNA_Seq
14.	SRR8517644	RNase_R_treatment_RNA_Seq_rep1\|RNase_R_treatment_RNA_Seq
15.	SRR5933781	S_0_1\|S-0-1
16.	SRR5986245	SP100-1R\|SP100-1R
17.	SRR5986249	SP100-3L\|SP100-3L
18.	SRR5986244	SP100-3S\|SP100-3S
19.	SRR22954653	WT-bio1\|T1
20.	SRR22954652	WT-bio2\|T2
21.	SRR22954651	WT-bio3\|T3
22.	SRR5933785	ck_1\|ck-1

Prunus_persica

No.	Accession number	Tissue type
1.	SRR7262553	A3\|A
2.	SRR7262552	C1\|C
3.	SRR10432651	FTRNA2_2_R1\|FTRNA2_2_R1
4.	SRR10432650	FTRNA2_3_R1\|FTRNA2_3_R1
5.	SRR18894129	HS2\|HS2
6.	SRR18894128	HS3\|HS3
7.	SRR3658845	Minus-D-12_1\|Minus-D-12_1
8.	SRR3658847	Minus-D-18_1\|Minus-D-18_1
9.	SRR3658843	Minus-D-6_1\|Minus-D-6_1
10.	SRR5074714	Baekcheon\|Peach cultivar Baekcheon
11.	SRR5074715	Cheonhong\|Peach cultivar Cheonhong
12.	SRR5074728	Janghowon\|Peach cultivar Janghowon
13.	SRR5405089	Peach_immature_RNA-seq_1:SZ027:RNA-Seq:paired:HiSeqXTen\|Peach_immature_RNA-seq_1
14.	SRR6320461	Peach_immature_RNA-seq_2:PH094:RNA-seq:paired:HiSeqXTen\|Peach_immature_RNA-seq_2
15.	SRR6320460	Peach_leaf_RNA-seq_2:PH094:RNA-seq:paired:HiSeqXTen\|Peach_leaf_RNA-seq_2
16.	SRR5405088	Peach_ripe_RNA-seq_1:SZ041:RNA-Seq:paired:HiSeqXTen\|Peach_ripe_RNA-seq_1
17.	SRR7410689	P02\|Pp6-02
18.	SRR7410690	P09\|Pp8-03
19.	SRR10390619	SS005\|PpSMS_Jan002
20.	SRR10390618	SS006\|PpSMS_Jan003
21.	SRR531865	NA\|"Prunus persica
22.	SRR15666172	R05\|R05
23.	SRR15665917	R16\|R16
24.	SRR15665916	R160\|R160
25.	SRR5929253	RG_E3-1\|RG
26.	SRR5929254	RG_E3-2\|RG
27.	SRR5929255	RG_E4-1\|RG

Selaginella_moellendorffii

No.	Accession number	Tissue type
1.	SRR8149074	JN\|JN
2.	ERR8313668	00d_R2_p\|SAMEA12812860
3.	ERR8313669	00d_R3_p\|SAMEA12812861
4.	ERR8313670	00d_R4_p\|SAMEA12812862
5.	ERR8313671	01d_R1_p\|SAMEA12812863
6.	ERR8313672	01d_R2_p\|SAMEA12812864
7.	ERR8313673	01d_R3_p\|SAMEA12812865
8.	ERR8313674	02d_R1_p\|SAMEA12812866
9.	ERR8313675	02d_R2_p\|SAMEA12812867
10.	ERR8313676	02d_R3_p\|SAMEA12812868
11.	ERR8313677	02d_R4_p\|SAMEA12812869
12.	ERR8313678	03d_R2_p\|SAMEA12812870
13.	ERR8313687	NM_R3_p\|SAMEA12812879
14.	ERR8313688	NM_R4_p\|SAMEA12812880
15.	SRR7132766	S_moellendorffii\|Selaginella moellendorffii
16.	SRR5499402	Smo_mRNA\|Smo_mRNA

Setaria_italica

No.	Accession number	Tissue type
1.	SRR10894725	BRAS190486666-1A\|D-3
2.	SRR10894724	BRAS190486668-1A\|DHA-1
3.	SRR10894723	BRAS190486670-1A\|DHA-2
4.	SRR10894722	BRAS190486672-1A\|DHA-3
5.	SRR11840499	JG 35_S2_3\|JG 35
6.	SRR11840506	JG 39_S3_2\|JG 39
7.	SRR12972558	JG21_2_G\|JG21_2_G
8.	SRR11839842	Atlas-28\|Leaf 2-4
9.	SRR11839841	Atlas-29\|Leaf 2-5
10.	SRR11839840	Atlas-30\|Leaf 3-1
11.	SRR11839832	Atlas-37\|LeafJG2-2
12.	SRR11839831	Atlas-38\|LeafJG2-3
13.	SRR11839830	Atlas-39\|LeafJG2-4
14.	SRR11839829	Atlas-40\|LeafJG2-5
15.	SRR11839854	Atlas-17\|Panicle 2-2
16.	SRR11839849	Atlas-21\|Panicle 3-3
17.	SRR11839823	Atlas-10\|Root-1
18.	SRR11839839	Atlas-4\|Seedling-1
19.	SRR11839828	Atlas-5\|Seedling-2
20.	SRR11839827	Atlas-6\|Seedling-3
21.	SRR11472829	Setaria italic Sita12-1\|Setaria italic Sita12-1
22.	SRR11472830	Setaria viridis Svir14-3\|Setaria viridis Svir14-3
23.	SRR11839826	Atlas-7\|Stem-1
24.	SRR11839825	Atlas-8\|Stem-2
25.	SRR11839824	Atlas-9\|Stem-3
26.	SRR12972557	YG1_1_G\|YG1_1_G
27.	SRR12972556	YG1_2_G\|YG1_2_G
28.	SRR11621934	LC-008\|leaf-wellwatered
29.	SRR11621935	RR-008\|root-rehydration
30.	SRR11621933	RC-008\|root-wellwatered

Solanum_lycopersicum

No.	Accession number	Tissue type
1.	SRR2840509	a2e26854f3c5de690f786439ea37f81e\|3DAPSH22
2.	SRR2840511	31c2a59a8cd215de99027b479bc7fec0\|5DAPSH32
3.	SRR5431057	A32\|A32
4.	SRR5431056	A33\|A33
5.	SRR1609960	AC B-2\|AC B-2
6.	SRR5192945	CK1 1\|CK1 1
7.	SRR5192944	CK1 2\|CK1 2
8.	SRR5192943	CK1_3\|CK1_3
9.	SRR10968550	F36-B\|F36-B
10.	SRR10968547	F37-B\|F37-B
11.	SRR10968548	F37-O\|F37-O
12.	SRR788859	NA\|Flower abscission zone transcriptome analysis of VF-36
13.	SRR567999	NA\|GSM1003342
14.	SRR568000	NA\|GSM1003343
15.	SRR6820661	LIB24707 Lane2\|MicroTom Root 11
16.	SRR6820660	LIB24708 Lane2\|MicroTom Root 12
17.	SRR960389	Total RNA from roots of infected Micro-Tom\|Microtom_10k_nematode_infected
18.	SRR960404	Total RNA from roots of infected Micro-Tom\|Microtom_10k_nematode_infected
19.	SRR960387	Total RNA from roots of Micro-Tom\|Microtom_control
20.	SRR5933027	RS-220\|RS-220
21.	SRR5933026	RS-221\|RS-221
22.	SRR6808790	S3\|S1_3
23.	SRR786524	NA\|SLY.HRFR.leaf.06.091119.GCT.Combo1_PE
24.	SRR786525	NA\|SLY.HRFR.leaf.10.091217.GCT.Combo1_PE
25.	SRR786526	NA\|SLY.HRFR.root.06.091119.AAA.Combo1_PE
26.	SRR786527	NA\|SLY.HRFR.root.10.091217.AAA.Combo1_PE
27.	SRR786528	NA\|SLY.HRFR.root.14.100227.AAA.Combo22_68_PE
28.	SRR786529	NA\|SLY.HRFR.sdling.07.091119.AGG.Combo2_PE
29.	SRR786530	NA\|SLY.HRFR.sdling.11.091217.AGG.Combo2_PE
30.	SRR786531	NA\|SLY.HRFR.stem.09.091204.CGT.Combo4_PE
31.	SRR786532	NA\|SLY.HRFR.stem.13.091230.CGT.Combo4_PE
32.	SRR786533	NA\|SLY.HRFR.veg.07.091119.GTC.Combo2_PE
33.	SRR786534	NA\|SLY.HRFR.veg.11.091217.GTC.Combo2_PE
34.	SRR786535	NA\|SLY.LRFR.floral.07.091119.AAA.Combo2_PE
35.	SRR786536	NA\|SLY.LRFR.floral.11.091217.AAA.Combo2_PE
36.	SRR786537	NA\|SLY.LRFR.floral.15.100227.AAA.Combo24_66_PE
37.	SRR786538	NA\|SLY.LRFR.fruit.07.091119.GCT.Combo2_PE
38.	SRR786539	NA\|SLY.LRFR.fruit.11.091217.GCT.Combo2_PE
39.	SRR786540	NA\|SLY.LRFR.leaf.09.091204.CAC.Combo4_PE
40.	SRR786541	NA\|SLY.LRFR.leaf.13.091230.CAC.Combo4_PE
41.	SRR786542	NA\|SLY.LRFR.leaf.15.100227.CAC.Combo24_66_PE
42.	SRR786543	NA\|SLY.LRFR.root.09.091204.TCA.Combo4_PE
43.	SRR786544	NA\|SLY.LRFR.root.13.091230.TCA.Combo4_PE
44.	SRR786545	NA\|SLY.LRFR.sdling.06.091119.TTG.Combo1_PE
45.	SRR786546	NA\|SLY.LRFR.sdling.10.091217.TTG.Combo1_PE
46.	SRR786548	NA\|SLY.LRFR.stem.12.091230.AGG.Combo3_PE
47.	SRR988278	NA\|SL_Bud_r1
48.	SRR988418	NA\|SL_Bud_r2
49.	SRR788904	NA\|Solanum lycopersicum Transcriptome or Gene expression
50.	SRR1514812	rin B-1\|rin B-1
51.	SRR2102073	rin B-1\|rin B-1
52.	SRR1609961	rin B-2\|rin B-2

Solanum_tuberosum

No.	Accession number	Tissue type
1.	SRR1039535	NA\|Dormant and sprouting tubers
2.	SRR1103934	NA\|Dormant and sprouting tubers
3.	SRR1232054	R3373_DMplt2Rt\|R3373_DMplt2Rt
4.	SRR4032276	NPV_LV_01\|NPV_LV
5.	SRR4032277	NPV_LV_02\|NPV_LV
6.	SRR5808739	NA\|potato_split_shoot
7.	SRR5808740	NA\|potato_split_shoot
8.	SRR5970129	NPV_SM\|NPV_SM
9.	SRR6055667	NA\|DT_1
10.	SRR6338815	P-2\|P-2
11.	SRR6338814	P-3\|P-3
12.	SRR7507970	Pbr 3; 24h :L3\|Pbr 3; 24h :L3
13.	SRR7507971	CFA 1; 24h :L3\|CFA 1; 24h :L3
14.	SRR7507972	Pbr 1; 24h :L3\|Pbr 1; 24h :L3
15.	SRR7507903	Pbr 2; 6h :L5\|Pbr 2; 6h :L5
16.	SRR8389896	NK_B1\|NK_B1
17.	SRR8389894	CC_A1\|CC_A1
18.	SRR10376113	RH_RNA_S22\|RH
19.	SRR10376118	RH_RNA_S17\|RH
20.	SRR10376119	RH_RNA_S16\|RH
21.	SRR10376121	RH_RNA_S14\|RH
22.	SRR10376123	RH_RNA_S13\|RH
23.	SRR10376125	RH_RNA_S11\|RH
24.	SRR10376126	RH_RNA_S10\|RH
25.	SRR10376128	RH_RNA_S8\|RH
26.	SRR10376129	RH_RNA_S7\|RH
27.	SRR10376132	RH_RNA_S4\|RH
28.	SRR10376136	RH_RNA_S1\|RH

Sorghum_bicolor

No.	Accession number	Tissue type
1.	SRR1829997	NA\|Ji_Mature
2.	SRR2924914	NA\|Y
3.	SRR2924915	NA\|Y
4.	SRR2924916	NA\|Y
5.	SRR3064884	NA\|Sb BTx623 pollen
6.	SRR3087372	NA\|"Sb BTx623 root
7.	SRR3087932	NA\|"Sb BTx623 root
8.	SRR6188840	WWR22\|BTx406_stem_T4
9.	SRR6188841	WWR21\|BTx406_stem_T3
10.	SRR8401514	Sorghum_bicolor\|Sorghum bicolor
11.	SRR11614445	P5\|Visible Light + UVA-Tx3362-10 days post anthesis-developing pericarp tissue-P5
12.	SRR11614444	P4\|Visible Light + UVA + UVB-Tx3362-10 days post anthesis-developing pericarp tissue-P4
13.	SRR12305132	SO85_Awn2\|SO85_Awn2
14.	SRR12305121	SO85_Awn3\|SO85_Awn3
15.	SRR12305116	SO85_Leaf1\|SO85_Leaf1
16.	SRR12305114	SO85_Leaf3\|SO85_Leaf3
17.	SRR12305111	SO85_SS3\|SO85_SS3
18.	SRR12305110	SO85_STS1\|SO85_STS1
19.	SRR15558348	Sorghum_PE_Ndep-3\|Sorghum_Ndep-3
20.	SRR15558347	Sorghum_PE_Pdep-1\|Sorghum_Pdep-1
21.	SRR18095199	L10\|NK1
22.	SRR19383853	so2b_lane1_lane2\|so2b
23.	SRR19383852	so2c_lane1_lane2\|so2c

Theobroma_cacao

No.	Accession number	Tissue type
1.	SRR11060113	SO-8201-C\|R_control
2.	SRR11060112	SO-8201-D1\|R_disease1
3.	SRR11060111	SO-8201-D2\|S_disease2
4.	SRR3217276	TC_CIRAD_KC1_lib1\|TC_CIRAD_KC1
5.	SRR3217319	TC_CIRAD_KC10_lib1\|TC_CIRAD_KC10
6.	SRR3217277	TC_CIRAD_KC2_lib1\|TC_CIRAD_KC2
7.	SRR3217298	TC_CIRAD_KC3_lib1\|TC_CIRAD_KC3
8.	SRR3217299	TC_CIRAD_KC4_lib1\|TC_CIRAD_KC4
9.	SRR3217301	TC_CIRAD_KC5_lib1\|TC_CIRAD_KC5
10.	SRR3217304	TC_CIRAD_KC6_lib1\|TC_CIRAD_KC6
11.	SRR3217315	TC_CIRAD_KC7_lib1\|TC_CIRAD_KC7
12.	SRR3217317	TC_CIRAD_KC8_lib1\|TC_CIRAD_KC8
13.	SRR3217318	TC_CIRAD_KC9_lib1\|TC_CIRAD_KC9
14.	SRR3217297	TC_CIRAD_KS10_lib1\|TC_CIRAD_KS10
15.	SRR3217294	TC_CIRAD_KS9_lib1\|TC_CIRAD_KS9
16.	SRR851884	Ma leaf 1\|Theobroma cacao Matina 1-6 leaf
17.	SRR851885	Ma 2\|Theobroma cacao Matina 1-6 leaf
18.	SRR850922	Illumina mRNA\|Theobroma cacao leaf RNAs set 1
19.	SRR851125	ca4\|Theobroma cacao pistil RNAs set 1
20.	SRR851130	ca9\|Theobroma cacao pistil RNAs set 1
21.	SRR851131	ca10\|Theobroma cacao pistil RNAs set 1

Trifolium_pratense

No.	Accession number	Tissue type
1.	SRR5312542	M1\|M1
2.	SRR5312541	M2\|M2
3.	SRR5312540	M3\|M3
4.	SRR5312545	O1\|O1
5.	SRR5312544	O2\|O2
6.	SRR5312543	O3\|O3
7.	SRR987949	Sensitive control\|Sensitive Control
8.	SRR987952	Sensitive drought\|Sensitive Drought
9.	SRR987951	Tolerant control\|Tolerant control
10.	SRR987953	Tolerant drought\|Tolerant drought

Vitis_vinifera

No.	Accession number	Tissue type
1.	SRR6320539	Grape_Friut_break_RNA-seq_2:PH094:RNA-seq:paired:HiSeqXTen\|Grape_Friut_break_RNA-seq_2
2.	SRR6320538	Grape_Friut_green_RNA-seq_2:PH095:RNA-seq:paired:HiSeqXTen\|Grape_Friut_green_RNA-seq_2
3.	SRR6320540	Grape_Friut_ripe_RNA-seq_2:PH094:RNA-seq:paired:HiSeqXTen\|Grape_Friut_ripe_RNA-seq_2
4.	SRR5405121	Grape_leaf_RNA-seq_1:SZ065:RNA-Seq:paired:HiSeqXTen\|Grape_leaf_RNA-seq_1
5.	SRR6320536	Grape_leaf_RNA-seq_2:PH094:RNA-seq:paired:HiSeqXTen\|Grape_leaf_RNA-seq_2
6.	SRR6320537	Grape_leaf_RNA-seq_3:PH094:RNA-seq:paired:HiSeqXTen\|Grape_leaf_RNA-seq_3
7.	SRR5405118	Grape_ripe_RNA-seq_1:PH009:RNA-Seq:paired:HiSeqXTen\|Grape_ripe_RNA-seq_1
8.	SRR14697007	Kishmish Vatkana: replicate 1 - tendrils\|Kishmish Vatkana (berry - replicate1)
9.	SRR14697004	Rkatsiteli: replicate 1 - tendrils\|Rkatsiteli (berry - replicate1)
10.	SRR14697002	Sangiovese: replicate 1 - tendrils\|Sangiovese (berry - replicate1)
11.	SRR6706485	Grapevine 8 d_R3\|Sample12_8_day
12.	SRR6706484	Grapevine 0 d_R1\|Sample1_0_day
13.	SRR6706483	Grapevine 2 d_R1\|Sample4_2_day
14.	SRR7451535	VT2_72h_2\|VT2_72h (repeat 2)
15.	SRR7451534	VT2_72h_3\|VT2_72h (repeat 3)
16.	SRR7768546	16-2\|Grape_bud_Apr_T_rep2
17.	SRR7768554	6-2\|Grape_bud_Dec_B_rep2
18.	SRR7768553	7\|Grape_bud_Jan_T_rep1
19.	SRR8979763	Vitis-Chimenti-PUC-CGR1\|CGR1
20.	SRR8979767	Vitis-RedGlobe-PUC-RGR2\|RGR2
21.	SRR8979765	Vitis-RedGlobe-PUC-RGV2\|RGV2
22.	SRR9016426	Control_replicate 1\|Control grapevine roots
23.	SRR9016427	Control_replicate 2\|Control grapevine roots
24.	SRR10518988	berry_EV_1.1\|berry_EV_1.1
25.	SRR10518987	berry_EV_1.2\|berry_EV_1.2
26.	SRR10518928	leaf_NG_3.1\|leaf_NG_3.1
27.	SRR10973035	Sample_MT1\|Comparison of transcriptome between the control and melatonin-treated grape berries
28.	SRR14777744	Fiori_02\|Pinot_Noir_flower2
29.	SRR14777748	Fiori_08\|Pinot_Noir_flower2
30.	SRR14777754	Fiori_27\|Pinot_Noir_flower2
31.	SRR14777756	Fiori_25\|Pinot_Noir_flower3
32.	SRR14777759	Fiori_22\|Pinot_Noir_flower3
33.	SRR17332376	T50_2\|T50_2
34.	SRR19509234	D2.1\|D2.1
35.	SRR19509233	D3.1\|D3.1
36.	SRR22556601	RTT50_3\|RTT50_3

Zea_mays

No.	Accession number	Tissue type
1.	SRR254172	MaizeOvule2\|FGMG-O2
2.	SRR254175	MaizeOvule3\|FGMG-O3
3.	SRR255405	MaizePollen2\|FGMG-P2
4.	SRR252662	MaizePollen3\|FGMG-P3
5.	SRR242505	MaizeSeedling1\|FGMG-S1
6.	SRR250415	MaizeSeedling3\|FGMG-S3
7.	SRR354213	ST-DA10_432\|Maize mature leaf
8.	SRR354214	ST-DA11_321\|Maize mature leaf - bundle sheath cell
9.	SRR354215	ST-DA11_453\|Maize mature leaf - bundle sheath cell
10.	SRR501912	inbred RNA-seq\|B73 leaf rep1
11.	SRR502745	inbred RNA-seq\|B73 tassel rep2
12.	SRR502746	inbred RNA-seq\|B73 tassel rep3
13.	SRR502717	inbred RNA-seq\|Mo17 leaf rep1
14.	SRR502743	inbred RNA-seq\|Mo17 leaf rep3
15.	SRR1620960	SS-38\|SS-38_S
16.	SRR571906	NA\|B73_20_S
17.	SRR571908	NA\|B73_30_S
18.	SRR912824	NA\|CML171
19.	SRR912827	NA\|TY1
20.	SRR1282039	NA\|GSM1383176
21.	SRR1282047	NA\|GSM1383184
22.	SRR1282048	NA\|GSM1383185
23.	SRR1282049	NA\|GSM1383186
24.	SRR1523538	NA\|rth6 wt [rth6/s(B73-5)@] Batch2
25.	SRR1523539	NA\|rth6 wt [rth6/s(B73-5)@] Batch2
26.	SRR1523540	NA\|rth6 wt [rth6/s(B73-5)@] Batch2
27.	SRR1758104	NA\|Oh43
28.	SRR1758128	NA\|Tx303
29.	SRR1837793	SAM34_4\|I29
30.	SRR1837794	SAM22_1\|IA2132
31.	SRR1944905	NA\|Embryo
32.	SRR1944906	NA\|endosperm
33.	SRR2886942	NA\|Maize_leaf_control_1
34.	SRR2886943	NA\|Maize_leaf_control_2
35.	SRR2886947	NA\|Maize_leaf_control_3