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Detailed information on CNT3051702


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640872Amborella trichopodaNymphaea colorata79.2564.0780485forward
CNT30316118Amborella trichopodaCorylus avellana69.9359.9479.21428forward
CNT30549166Amborella trichopodaIpomoea triloba64.5458.7878.73395forward
CNT30377104Amborella trichopodaArabidopsis thaliana81.2170.480.28497forward
CNT30616460Amborella trichopodaSesamum indicum72.3930.8778.78443forward
CNT30727661Amborella trichopodaCorchorus capsularis97.0694.8977.78594forward
CNT30403782Amborella trichopodaBeta vulgaris30.3944.581.18186forward
CNT30628784Amborella trichopodaVigna unguiculata73.6959.2678.94451forward
CNT3042412Amborella trichopodaPrunus dulcis76.863.4378.72470forward
CNT3091701Amborella trichopodaSolanum tuberosum77.7862.6379.2476forward
CNT30307041Amborella trichopodaTriticum aestivum38.0743.4781.55233forward
CNT30559890Amborella trichopodaActinidia chinensis85.9577.0179.85526forward
CNT3087851Amborella trichopodaVigna radiata96.964.8878.41593forward
CNT30235097Amborella trichopodaBrassica oleracea71.5754.6879438forward
CNT30508904Amborella trichopodaSolanum lycopersicum69.4468.7780425forward
CNT30443444Amborella trichopodaAegilops tauschii20.4213.4384125forward
CNT30312353Amborella trichopodaCamelina sativa57.6886.179.32353forward
CNT3062262Amborella trichopodaArabidopsis lyrata69.9378.180.14428forward
CNT30263540Amborella trichopodaBrassica rapa56.2153.3378.78344forward
CNT30468540Amborella trichopodaSaccharum spontaneum38.0726.9181.12233forward
CNT30141877Amborella trichopodaLolium perenne39.5454.0280.99242forward
CNT3016767Amborella trichopodaZea mays43.4635.1981.2266forward
CNT3067979Amborella trichopodaLeersia perrieri46.4178.8978.87284forward
CNT30350936Amborella trichopodaEragrostis tef50.3367.6980.52308forward
CNT30476941Amborella trichopodaArabidopsis halleri81.2162.0580.28497forward
CNT30154791Amborella trichopodaPrunus persica81.764.3578.8500forward
CNT30573870Amborella trichopodaVitis vinifera88.0776.4579.78539forward
CNT3035176Amborella trichopodaCucumis melo73.3781.6478.4449forward
CNT30584594Amborella trichopodaEchinochloa crusgalli45.7545.3182.5280forward
CNT30176441Amborella trichopodaVigna angularis96.4197.5277.97590forward
CNT3049385Amborella trichopodaCucumis sativus73.3756.6980.18449forward

Expression of CNT3051702

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MWGYSLVTWGYNSVKWENKMGLWENKQEKLGYSQES*

>peptide 2 (42 aa)
WKETFLDCLENKQERDYTSPKGDCNSEKLGYSFGRSDYSLAM*

>peptide 3 (54 aa)
GRRHSWTAWRINKRGTILRRRGIVTRRSWAIASGGRTIAWRCRAITRRSGAISR*

>peptide 4 (28 aa)
MWGYTLEMWGYSQEMWDYILEMMDCSLVM

Sequence

>CNT3051702
CTGGAAGGAGACATTCTTGGACTGCTTGGAGAATAAACAAGAGAGGGACTATACTTCGCCGAAGGGGGATTGTAACTCGGAGAAGTTGGGCTATAGCTTC
GGGAGGTCGGACTATAGCTTGGCGATGTAGGGCTATAACCAGGAGAAGTGGGGCTATAAGCAGGTGAAGTGGGACTGTATGAAGGTGAGGTTGGGCTATA
GGAAGGTGATGTAGGGCTATAGGAAGGTGAAGTTGGGCTATAAGAAGGCGAGGTTGGGCTATAAGCAGGCGAAGTTGGGCTGTAGGCTGGCGAGGTAGGG
CTATAGGCTGGAGAGGTAGGGCTATAAACCGGAGACGTAGGACTATAGCTCGGTGAGGTGGGGCTATAGCTAGGGGATGTGGGGCTATAGCTTGGTGACG
TGGGGCTATAACTCGGTGAAGTGGGAGAATAAGATGGGCTTGTGGGAGAATAAGCAGGAGAAGTTGGGCTATAGCCAGGAGAGCTAGGGCTATACGTCGG
AGAGGTTGGGCTGTAACCGGGGGATGTGGGGCTATACCCTGGAGATGTGGGGCTATAGCCAGGAGATGTGGGACTATATCCTGGAGATGATGGACTGTAG
CCTGGTGATGAA