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Detailed information on CNT3049385

BLAST search results

BLAST vs Swiss-Prot:
sp|P18616|NRPB1_ARATH, E-value = 3e-06

BLAST vs NONCODE:
NONSLYT000794, E-value = 3e-55

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30315993	Cucumis sativus	Corylus avellana	53.54	42.27	84.2	424	forward
CNT30549166	Cucumis sativus	Ipomoea triloba	55.93	65.92	79.23	443	forward
CNT30516792	Cucumis sativus	Juglans regia	61.99	55.17	82.48	491	forward
CNT30376379	Cucumis sativus	Arabidopsis thaliana	60.1	63.98	83.4	476	forward
CNT30500604	Cucumis sativus	Coffea canephora	53.28	68.62	80.81	422	forward
CNT30616458	Cucumis sativus	Sesamum indicum	58.46	62.82	80.78	463	forward
CNT30269263	Cucumis sativus	Chenopodium quinoa	48.36	50.26	80.94	383	forward
CNT30727661	Cucumis sativus	Corchorus capsularis	55.43	70.13	82.23	439	forward
CNT30403468	Cucumis sativus	Beta vulgaris	39.52	40.44	80.83	313	forward
CNT3042435	Cucumis sativus	Prunus dulcis	66.16	75.72	85.69	524	forward
CNT3091701	Cucumis sativus	Solanum tuberosum	57.45	59.87	80.44	455	forward
CNT30559890	Cucumis sativus	Actinidia chinensis	59.47	68.96	82.59	471	forward
CNT30591924	Cucumis sativus	Musa acuminata	38.89	57.79	80.52	308	forward
CNT3087851	Cucumis sativus	Vigna radiata	56.69	49.12	80.62	449	forward
CNT30508904	Cucumis sativus	Solanum lycopersicum	47.98	61.49	80.79	380	forward
CNT30145737	Cucumis sativus	Medicago truncatula	39.27	50.49	81.67	311	forward
CNT30256659	Cucumis sativus	Avena sativa	60.35	66.85	78.66	478	forward
CNT30312432	Cucumis sativus	Camelina sativa	44.57	90.75	81.87	353	forward
CNT3062262	Cucumis sativus	Arabidopsis lyrata	35.48	51.28	85.41	281	forward
CNT30468540	Cucumis sativus	Saccharum spontaneum	49.87	45.61	79.75	395	forward
CNT3017147	Cucumis sativus	Zea mays	41.16	45.59	81.6	326	forward
CNT30607743	Cucumis sativus	Gossypium raimondii	59.85	70.22	81.86	474	forward
CNT3067990	Cucumis sativus	Leersia perrieri	31.69	65.88	81.67	251	forward
CNT30205386	Cucumis sativus	Helianthus annuus	31.82	35.24	81.35	252	forward
CNT30625810	Cucumis sativus	Daucus carota	27.9	32.6	84.16	221	forward
CNT30688581	Cucumis sativus	Triticum urartu	33.21	45.27	81.75	263	forward
CNT30350937	Cucumis sativus	Eragrostis tef	51.52	73.78	80.15	408	forward
CNT30476941	Cucumis sativus	Arabidopsis halleri	58.59	57.93	82.11	464	forward
CNT30366537	Cucumis sativus	Sorghum bicolor	32.07	29.13	83.07	254	forward
CNT30620243	Cucumis sativus	Cajanus cajan	25.63	61.14	82.27	203	forward
CNT30354836	Cucumis sativus	Lactuca sativa	27.9	38.3	84.16	221	forward
CNT30154742	Cucumis sativus	Prunus persica	66.16	62.46	85.88	524	forward
CNT30408809	Cucumis sativus	Papaver somniferum	57.95	53.12	80.61	459	forward
CNT30573870	Cucumis sativus	Vitis vinifera	58.59	65.82	81.25	464	forward
CNT30705859	Cucumis sativus	Prunus avium	66.54	70.55	85.01	527	forward
CNT30642027	Cucumis sativus	Cannabis sativa	54.04	67.08	83.41	428	forward
CNT3028162	Cucumis sativus	Theobroma cacao	47.6	67.2	82.49	377	forward
CNT3051702	Cucumis sativus	Amborella trichopoda	56.69	73.37	80.18	449	forward
CNT30121049	Cucumis sativus	Citrus clementina	66.92	48.98	81.32	530	forward
CNT3035176	Cucumis sativus	Cucumis melo	55.93	80.55	92.33	443	forward
CNT30584594	Cucumis sativus	Echinochloa crusgalli	38.51	49.35	81.64	305	forward
CNT30176441	Cucumis sativus	Vigna angularis	51.01	66.78	81.19	404	forward
CNT30551544	Cucumis sativus	Oryza brachyantha	32.83	37.41	81.54	260	forward

Expression of CNT3049385

Peptides detected in this lncRNA

>peptide 1 (92 aa)
MLERWGCTKVMWDCKTVMLGCRRVKLGCRRAKLGCRRGMLGCRRVKLGCRRVKLGCRRVKLGCMQVKWGCKQAKWGCNLGKWGCNLVMWGCN*

Sequence

>CNT3049385
CTGTAATTGGGCGAGGTTGGGCTATATGGACTTGAAGGAGACAACCGTGGACTACTGGGTAAGTACGCCTGTGATGGGCTGTATTTAGCTGATTGAGGAT
TATAACTAGGTGAGGTTGGACTATAGCTAGGAGAAGTGGGGCTATAGCTCGGTGACGTGGGACTATAGCCAGGGGAGGTGGGGCTATATGCTGGAGAGGT
GGGGCTGTACGAAGGTGATGTGGGACTGTAAGACGGTGATGTTGGGCTGTAGGAGGGTGAAGTTGGGCTGTAGGAGGGCGAAGTTGGGCTGTAGGAGGGG
GATGTTGGGCTGTAGGAGGGTGAAGTTGGGCTGTAGGAGGGTGAAGTTGGGCTGTAGGAGGGTGAAGTTGGGCTGTATGCAGGTGAAGTGGGGCTGTAAG
CAGGCGAAGTGGGGCTGTAACTTGGGGAAGTGGGGCTGTAACTTGGTGATGTGGGGCTGTAACTAGGAGAGGTGGGGCTGTAACTTGGAGAGGTTGGGCT
GTAACTGGGAGAGGTGGGTGAATAAGATGGACTTGTAGGAGAATATGCAGGACTAGTTGGGCTATAGCCCGGCGAACTAGGACTGTAAGTTGGAGATGTA
GGACTGTAGCCTGGAGAGGTAGGGCTGTACCCTGGAGAAGTAGGACTATAACCAGGAGATGTGGGACTATAGCCAGGGGATGATGGACTGTAGCCCGGAG
ATGATGGGCTATAGCCTGGAGATGACGTAGGAGAGAATGCCATGCCTCCTACATAGGGTGAAAATTGAGCGTCGCTGATAGGTGACAGGCGG