« Back to Nicotiana attenuata search


Detailed information on CNT30506120


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT000794, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640872Nicotiana attenuataNymphaea colorata50.639.180.07296forward
CNT30536082Nicotiana attenuataEucalyptus grandis33.6833.2883.76197forward
CNT30316008Nicotiana attenuataCorylus avellana41.5437.1684.36243forward
CNT30516858Nicotiana attenuataJuglans regia34.747.3285.71203forward
CNT30376525Nicotiana attenuataArabidopsis thaliana54.8741.9680.06321forward
CNT30500730Nicotiana attenuataCoffea canephora45.4730.7981.58266forward
CNT30616460Nicotiana attenuataSesamum indicum69.0628.1582.43404forward
CNT3021339Nicotiana attenuataCitrullus lanatus45.9842.4380.3269forward
CNT30727661Nicotiana attenuataCorchorus capsularis21.3719.9784.8125forward
CNT30378927Nicotiana attenuataManihot esculenta76.9272.779.56450forward
CNT30403782Nicotiana attenuataBeta vulgaris42.5659.5781.93249forward
CNT30524942Nicotiana attenuataPhaseolus vulgaris51.6245.0182.78302forward
CNT30628702Nicotiana attenuataVigna unguiculata51.6244.0983.11302forward
CNT30489027Nicotiana attenuataOlea europaea37.2663.0182.57218forward
CNT30710529Nicotiana attenuataGlycine max53.3355.3282.37312forward
CNT30307041Nicotiana attenuataTriticum aestivum59.3264.7479.25347forward
CNT30400271Nicotiana attenuataTriticum turgidum59.3270.179.25347forward
CNT30559890Nicotiana attenuataActinidia chinensis39.8334.1184.12233forward
CNT3087851Nicotiana attenuataVigna radiata51.6233.0484.11302forward
CNT30235097Nicotiana attenuataBrassica oleracea51.1137.3379.93299forward
CNT30508904Nicotiana attenuataSolanum lycopersicum83.0878.6487.24486forward
CNT30554580Nicotiana attenuataOryza glaberrima68.0358.5380.9398forward
CNT30145737Nicotiana attenuataMedicago truncatula58.2955.3681.82341forward
CNT30443444Nicotiana attenuataAegilops tauschii47.8630.0880.36280forward
CNT30256655Nicotiana attenuataAvena sativa44.9658.5781.37263forward
CNT30312227Nicotiana attenuataCamelina sativa44.161.1482.17258forward
CNT3062262Nicotiana attenuataArabidopsis lyrata65.9870.4479.79386forward
CNT3079663Nicotiana attenuataBrassica juncea47.0151.6980.36275forward
CNT30263459Nicotiana attenuataBrassica rapa34.1936.9782200forward
CNT3017147Nicotiana attenuataZea mays43.9335.9482.49257forward
CNT30607906Nicotiana attenuataGossypium raimondii54.755.9481.56320forward
CNT30216750Nicotiana attenuataKalanchoe fedtschenkoi66.8479.879.28391forward
CNT30648253Nicotiana attenuataRosa chinensis36.2431.7882.08212forward
CNT30205370Nicotiana attenuataHelianthus annuus32.6529.2584.29191forward
CNT30625502Nicotiana attenuataDaucus carota37.7827.1584.16221forward
CNT30687113Nicotiana attenuataTriticum urartu39.8343.881.55233forward
CNT30476941Nicotiana attenuataArabidopsis halleri65.9848.1979.53386forward
CNT30620207Nicotiana attenuataCajanus cajan37.4410.1983.11219forward
CNT30596736Nicotiana attenuataOryza meridionalis51.624081.46302forward
CNT30354661Nicotiana attenuataLactuca sativa29.5731.1283.24173forward
CNT30370935Nicotiana attenuataOryza glumipatula51.6231.281.13302forward
CNT30408809Nicotiana attenuataPapaver somniferum70.0947.4582.2410forward
CNT30573855Nicotiana attenuataVitis vinifera75.7373.5981.26443forward
CNT30641843Nicotiana attenuataCannabis sativa56.7569.0279.82332forward
CNT3027877Nicotiana attenuataTheobroma cacao35.953.1682.86210forward
CNT3051605Nicotiana attenuataAmborella trichopoda40.3435.681.78236forward
CNT30121063Nicotiana attenuataCitrus clementina38.847.3982.82227forward
CNT3035160Nicotiana attenuataCucumis melo48.8956.7581.47286forward
CNT30330867Nicotiana attenuataDioscorea rotundata37.2630.1580.73218forward
CNT30577473Nicotiana attenuataOryza barthii44.6247.8981.23261forward
CNT30584443Nicotiana attenuataEchinochloa crusgalli65.9855.781.35386forward
CNT30558075Nicotiana attenuataPanicum hallii41.8831.0583.27245forward
CNT30551544Nicotiana attenuataOryza brachyantha61.3751.6579.94359forward
CNT3049674Nicotiana attenuataCucumis sativus38.2982.9682.59224forward

Expression of CNT30506120

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MQEKWDYMMEKWDYNLVRWGYMKARWGCKKVRWGCMKVKWGCKMAKWGCKMEKWGCRQAKWGCRQAK*

>peptide 2 (57 aa)
MWESTMDWLGNMLDLSDCSQESWGYKWGKWGCTPGTWGCNLGTWGCNLERSGCNQGKM

Sequence

>CNT30506120
GGCGAATATGCAAGGGAGGGGCTGTATCTCGCCGAGGGATTGTAACTTGGTGATGTAGGACTATATGATGGTGATGTTGGGCTGTAACTGGGAGATGTTG
GGCTGTAACCAGGGGAGGTAGGACTGTATGCAGGAGAAGTGGGACTATATGATGGAGAAGTGGGACTATAACTTGGTGAGGTGGGGCTATATGAAGGCGA
GGTGGGGCTGTAAGAAGGTGAGGTGGGGCTGTATGAAGGTGAAGTGGGGCTGTAAGATGGCGAAGTGGGGCTGTAAGATGGAGAAGTGGGGCTGTAGGCA
GGCGAAGTGGGGCTGTAGGCAGGCGAAGTAGGGCTATAGCTAGGCGATGTTGGGCTATAACTAGGAGATGTAGGGCTATAGCTCGGAGATGTTGGACTAT
AACTAGGTGATGTGGGAGAGTACGATGGACTGGTTGGGGAATATGCTGGACTTGTCGGACTGTAGCCAGGAGAGCTGGGGCTATAAGTGGGGGAAGTGGG
GCTGTACCCCGGGGACGTGGGGCTGTAACCTGGGGACGTGGGGCTGTAACCTGGAGAGGTCGGGCTGTAACCAGGGGAAGATGGG