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Detailed information on CNT30476941


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316118Arabidopsis halleriCorylus avellana57.9364.9982.11464forward
CNT30549101Arabidopsis halleriIpomoea triloba35.8348.6482.58287forward
CNT30516792Arabidopsis halleriJuglans regia79.5371.5780.06637forward
CNT30700558Arabidopsis halleriQuercus lobata31.3492.9683.27251forward
CNT30376704Arabidopsis halleriArabidopsis thaliana98.3810096.45788forward
CNT30500604Arabidopsis halleriCoffea canephora51.5667.1583.78413forward
CNT30616482Arabidopsis halleriSesamum indicum66.4234.8982.14532forward
CNT30267761Arabidopsis halleriChenopodium quinoa61.4260.2981.1492forward
CNT3021339Arabidopsis halleriCitrullus lanatus58.373.6682.01467forward
CNT30727661Arabidopsis halleriCorchorus capsularis70.2989.9481.53563forward
CNT30379091Arabidopsis halleriManihot esculenta35.0847.6381.85281forward
CNT30489068Arabidopsis halleriOlea europaea36.5859.3184.64293forward
CNT30506120Arabidopsis halleriNicotiana attenuata61.4284.178.86492forward
CNT30708216Arabidopsis halleriGlycine max60.5586.7681.24485forward
CNT3042435Arabidopsis halleriPrunus dulcis68.0478.7681.28545forward
CNT3091701Arabidopsis halleriSolanum tuberosum62.4265.7979.4500forward
CNT30307041Arabidopsis halleriTriticum aestivum33.5850.1981.04269forward
CNT30399358Arabidopsis halleriTriticum turgidum33.5846.381.04269forward
CNT30591924Arabidopsis halleriMusa acuminata43.765.6780.29350forward
CNT3087851Arabidopsis halleriVigna radiata71.0462.2578.73569forward
CNT30235097Arabidopsis halleriBrassica oleracea98.3898.3886.55788forward
CNT30508904Arabidopsis halleriSolanum lycopersicum62.1780.5880.52498forward
CNT30145737Arabidopsis halleriMedicago truncatula30.5939.7781.63245forward
CNT30256659Arabidopsis halleriAvena sativa33.5837.6281.78269forward
CNT30311656Arabidopsis halleriCamelina sativa66.5496.0490.81533forward
CNT3062262Arabidopsis halleriArabidopsis lyrata68.4110096.9548forward
CNT3076593Arabidopsis halleriBrassica juncea67.2998.7289.05539forward
CNT30263540Arabidopsis halleriBrassica rapa76.2894.7385.43611forward
CNT30468644Arabidopsis halleriSaccharum spontaneum37.4531.8882300forward
CNT3017147Arabidopsis halleriZea mays43.5748.8182.23349forward
CNT30607743Arabidopsis halleriGossypium raimondii66.1778.5280.57530forward
CNT30216750Arabidopsis halleriKalanchoe fedtschenkoi47.4477.5579.47380forward
CNT30648676Arabidopsis halleriRosa chinensis90.8997.7280.08728forward
CNT30205370Arabidopsis halleriHelianthus annuus29.4636.1481.78236forward
CNT30625810Arabidopsis halleriDaucus carota70.6683.4877.92566forward
CNT30688162Arabidopsis halleriTriticum urartu38.4545.8380.52308forward
CNT30350936Arabidopsis halleriEragrostis tef42.0774.0781.9337forward
CNT30366857Arabidopsis halleriSorghum bicolor49.6940.5381.91398forward
CNT30596739Arabidopsis halleriOryza meridionalis33.2140.9282.33266forward
CNT30354836Arabidopsis halleriLactuca sativa39.8355.2980.88319forward
CNT30154777Arabidopsis halleriPrunus persica96.3896.580.83772forward
CNT30408809Arabidopsis halleriPapaver somniferum50.4446.7680.45404forward
CNT30573855Arabidopsis halleriVitis vinifera61.4281.7380.49492forward
CNT30705859Arabidopsis halleriPrunus avium55.6859.7180.72446forward
CNT30642143Arabidopsis halleriCannabis sativa46.9491.4882.18376forward
CNT3027877Arabidopsis halleriTheobroma cacao30.5962.0384.9245forward
CNT3051702Arabidopsis halleriAmborella trichopoda62.0581.2180.28497forward
CNT3023318Arabidopsis halleriPopulus trichocarpa58.9373.7579.87472forward
CNT3035176Arabidopsis halleriCucumis melo58.6885.4580.43470forward
CNT30150463Arabidopsis halleriBrachypodium distachyon25.3423.0983.25203forward
CNT30103220Arabidopsis halleriOryza rufipogon43.737.6781.43350forward
CNT30577473Arabidopsis halleriOryza barthii33.2148.8181.95266forward
CNT30584450Arabidopsis halleriEchinochloa crusgalli43.3246.3382.13347forward
CNT30497833Arabidopsis halleriDigitaria exilis39.235.682.48314forward
CNT30176441Arabidopsis halleriVigna angularis33.9644.9681.62272forward
CNT30558075Arabidopsis halleriPanicum hallii26.4726.8783.02212forward
CNT30114394Arabidopsis halleriFicus carica21.2228.5785.29170forward
CNT30335475Arabidopsis halleriCynara cardunculus32.3319.9481.47259forward
CNT3049385Arabidopsis halleriCucumis sativus57.9358.5982.11464forward

Expression of CNT30476941

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MMGYSLEKKKAKRPFHQHMEKTVHLTLATNAYLDLTGSSETSCLHGKECLTLVNEQESFQI

>peptide 2 (36 aa)
MLGCKMVKLGCKKERLGCMLVKSGCKQAKSGCNLGT*

Sequence

>CNT30476941
CTGTAGTTCGGAGACGTAGGACTGTAGGGGCTAGCTGGTGATAGTCTCGCATTACTAGGAGAGTAAGCTATAGATGGGCTATATTTAGCAGACTGAGGGT
TGTAGCTTGGAGACGTAGGACCATAGCTTGGTGATGTTGGACTGTAACTTGGTGAAGTAGGGCTGTAGCCAGGAGATGTGGGGCTATATGCGGGTGAAGT
AGGACTGTAAGACGGTGATGTGGGACTGTATGATGGTGAAGTAGGGCTGTAAGAAGGCGATGTTGGGCTGTAAGATGGTGAAGTTGGGCTGTAAGAAGGA
GAGGTTGGGCTGTATGCTGGTGAAGTCGGGCTGTAAGCAGGCGAAGTCGGGCTGTAACTTGGGGACGTAGGACTGTAGCTTGGAGATGTAGGGCTGTAGC
TTGGCGACGTAGGGCTATAGCTTGGAGACGTAGGGCTATAGCTCGGAGACGTAGGAGAATAGGAAGGACTTGTAGGAGAATAAGCAGGGCTTGTTGGGCT
ATAGCCAGGAGAACTGGGACTGTAGGTAGGCGAAGTTGGACTATAACCGGGAGAAGTCGGGCTATATCCAGGTGAAGTGGGACTGTAACCGGGAGAAGTA
GGACTGTATCCAGGGGATGATGGGCTATAGCCTGGAGAAGAAGAAGGCGAAAAGGCCATTCCACCAACATATGGAGAAAACTGTGCATCTGACATTGGCG
ACAAACGCATATTTGGACTTAACAGGTAGTTCGGAGACATCATGCCTTCATGGTAAGGAGTGCCTGACACTGGTGAACGAGCAGGAGTCATTCCAAATTC
C