« Back to Panicum hallii search


Detailed information on CNT30558075


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT000794, E-value = 2e-44

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675703Panicum halliiSetaria viridis19.955.8793.63157forward
CNT30523577Panicum halliiSetaria italica64.1381.7486.96506forward
CNT30640872Panicum halliiNymphaea colorata33.7135.1481.2266forward
CNT30536082Panicum halliiEucalyptus grandis26.1134.881.55206forward
CNT30315993Panicum halliiCorylus avellana29.1522.9384.78230forward
CNT30549101Panicum halliiIpomoea triloba21.1728.3183.23167forward
CNT30516897Panicum halliiJuglans regia30.6727.3883.88242forward
CNT30376704Panicum halliiArabidopsis thaliana26.8726.983.96212forward
CNT30500604Panicum halliiCoffea canephora29.1537.480.87230forward
CNT30616515Panicum halliiSesamum indicum31.9437.3980.16252forward
CNT30269263Panicum halliiChenopodium quinoa32.5733.7384.44257forward
CNT3021339Panicum halliiCitrullus lanatus27.6334.3883.94218forward
CNT30727661Panicum halliiCorchorus capsularis32.1940.5883.07254forward
CNT30378908Panicum halliiManihot esculenta28.0123.4183.26221forward
CNT30403782Panicum halliiBeta vulgaris18.1234.2185.31143forward
CNT30524942Panicum halliiPhaseolus vulgaris26.6231.381.43210forward
CNT30628927Panicum halliiVigna unguiculata29.1541.0780.43230forward
CNT30489027Panicum halliiOlea europaea22.4351.1682.49177forward
CNT30506120Panicum halliiNicotiana attenuata33.4645.1379.92264forward
CNT30710529Panicum halliiGlycine max32.5745.5784.05257forward
CNT3042435Panicum halliiPrunus dulcis29.1533.2483.48230forward
CNT3091613Panicum halliiSolanum tuberosum31.8133.282.47251forward
CNT30193210Panicum halliiSecale cereale19.0170.0990150forward
CNT30304911Panicum halliiTriticum aestivum27.6336.4586.24218forward
CNT30400271Panicum halliiTriticum turgidum27.6344.0485.78218forward
CNT30559586Panicum halliiActinidia chinensis20.7920.3285.98164forward
CNT30591924Panicum halliiMusa acuminata22.6933.5882.68179forward
CNT30234460Panicum halliiBrassica oleracea28.7732.2982.38227forward
CNT30508904Panicum halliiSolanum lycopersicum31.8140.6182.07251forward
CNT30554580Panicum halliiOryza glaberrima51.9660.2981.71410forward
CNT30145737Panicum halliiMedicago truncatula25.7332.9581.28203forward
CNT30442780Panicum halliiAegilops tauschii45.1244.8980.9356forward
CNT30256655Panicum halliiAvena sativa20.6636.390.18163forward
CNT30668234Panicum halliiTriticum dicoccoides19.5226.1990.26154forward
CNT30312353Panicum halliiCamelina sativa25.3548.7884200forward
CNT3062262Panicum halliiArabidopsis lyrata27.2539.2383.26215forward
CNT3076593Panicum halliiBrassica juncea28.7741.5881.94227forward
CNT30263459Panicum halliiBrassica rapa30.2944.1882.01239forward
CNT30468644Panicum halliiSaccharum spontaneum68.8257.788.21543forward
CNT30141877Panicum halliiLolium perenne27.2547.9985.58215forward
CNT3017147Panicum halliiZea mays66.6773.5787.83526forward
CNT30607989Panicum halliiGossypium raimondii33.3337.6884.03263forward
CNT3067990Panicum halliiLeersia perrieri27.2556.4384.19215forward
CNT30625810Panicum halliiDaucus carota30.4235.480.42240forward
CNT30687113Panicum halliiTriticum urartu26.8739.8586.79212forward
CNT30350933Panicum halliiEragrostis tef44.8745.2184.46354forward
CNT30476941Panicum halliiArabidopsis halleri26.8726.4783.02212forward
CNT30366537Panicum halliiSorghum bicolor62.7456.7789.9495forward
CNT30620243Panicum halliiCajanus cajan23.0754.8284.07182forward
CNT30596736Panicum halliiOryza meridionalis65.1568.0880.54514forward
CNT30355182Panicum halliiLactuca sativa22.0524.8683.33174forward
CNT30370935Panicum halliiOryza glumipatula66.1653.9380.08522forward
CNT30154777Panicum halliiPrunus persica29.1528.7583.48230forward
CNT30408809Panicum halliiPapaver somniferum25.3523.1581.5200forward
CNT30573870Panicum halliiVitis vinifera33.7137.7382.71266forward
CNT30705862Panicum halliiPrunus avium29.1521.6683.04230forward
CNT30642025Panicum halliiCannabis sativa25.7339.5782.76203forward
CNT3028162Panicum halliiTheobroma cacao26.8737.7985.85212forward
CNT30109704Panicum halliiOryza longistaminata14.720.8686.21116forward
CNT3023412Panicum halliiPopulus trichocarpa26.6237.1782.86210forward
CNT30121049Panicum halliiCitrus clementina30.6722.3783.88242forward
CNT3035176Panicum halliiCucumis melo29.5342.3684.12233forward
CNT30330867Panicum halliiDioscorea rotundata21.6723.6583.04171forward
CNT30149986Panicum halliiBrachypodium distachyon46.5140.9186.1367forward
CNT30103004Panicum halliiOryza rufipogon65.7852.0680.15519forward
CNT30577473Panicum halliiOryza barthii51.9675.2380410forward
CNT30584421Panicum halliiEchinochloa crusgalli66.6765.2692.21526forward
CNT30498009Panicum halliiDigitaria exilis69.3355.8787.93547forward
CNT30551544Panicum halliiOryza brachyantha31.3135.5486.23247forward
CNT30335475Panicum halliiCynara cardunculus28.917.5580.26228forward
CNT3049544Panicum halliiCucumis sativus26.4926.0985.17209forward

Expression of CNT30558075

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MREMWGCMLVRLDYKLAKWGCSLVKWGCSLVMLGCNLEMLGCSLEMWASMMDWWASMLDLLGSNLGL*

>peptide 2 (33 aa)
MDCIPLMMESSHLVMEMVRMPCAQHMVRMKHLY*

>peptide 3 (35 aa)
CSLEMSDCMESSLGCLESKHVKGCTWLMKDCSSAK*

>peptide 4 (32 aa)
MKGMSGCMKGMLGCMKVMLGCRMAMWGCMMEM*

Sequence

>CNT30558075
CTGTAGTTTGGAGATGTCTGACTGTATGGAGTCATCCTTGGGCTGCTTGGAGAGTAAGCATGTGAAGGGCTGTACTTGGCTGATGAAGGATTGTAGCTCG
GCGAAGTAGGACTGTAGCTTGGCGATGTTGGGCTGTAACTCGGTGACGTTGGGCTGTAACCAGGCGAGGTAGGGCTGTATGCAGGCGACGTTGGACTGTA
GGAGGGGGAGGTAGGGCTGTATGAGGGGGAGGTAGGGCTGTATGAAGGGGATGTCGGGCTGTATGAAGGGGATGTTGGGCTGTATGAAGGTGATGTTGGG
CTGTAGGATGGCGATGTGGGGCTGTATGATGGAGATGTAGGGCTGTATGCGGGAGATGTGGGGCTGTATGCTGGTGAGGTTGGACTATAAACTGGCGAAG
TGGGGCTGTAGCTTGGTGAAGTGGGGCTGTAGCTTGGTGATGTTGGGCTGTAACTTGGAGATGTTGGGCTGTAGCTTGGAGATGTGGGCGAGTATGATGG
ACTGGTGGGCGAGTATGTTGGACTTGTTGGGGAGTAATTTGGGCTTGTAGGACTATAGGTGGGAGAGCCAGGTGTATAGGATGGTGAGGTGGGACTGTAA
CTTGGTGATGCAGGGCTGTATGATGGAGAAAGAGGGCTATATCCTTTTTCTGGGGTGAAAACCGGAGAAGATGGACTGTATCCCCCTGATGATGGAGAGT
AGCCACCTGGTGATGGAAATGGTGAGAATGCCATGTGCCCAACATATGGTGAGAATGAAGCATCTGTATTAATGGGGGAAGCCCTGATG