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Detailed information on CNT30366857


BLAST search results

BLAST vs Swiss-Prot:
sp|P18616|NRPB1_ARATH, E-value = 5e-53

BLAST vs NONCODE:
NONGMAT000067, E-value = 1e-54

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30536082Sorghum bicolorEucalyptus grandis31.8752.8781.47313forward
CNT30377104Sorghum bicolorArabidopsis thaliana40.5356.3782.41398forward
CNT30616482Sorghum bicolorSesamum indicum40.3325.9780.56396forward
CNT30269263Sorghum bicolorChenopodium quinoa43.5856.1782.01428forward
CNT3021339Sorghum bicolorCitrullus lanatus44.568.9378.95437forward
CNT30727661Sorghum bicolorCorchorus capsularis40.5363.5879.15398forward
CNT3042435Sorghum bicolorPrunus dulcis38.3954.4882.23377forward
CNT3091613Sorghum bicolorSolanum tuberosum29.8438.7680.2293forward
CNT30591949Sorghum bicolorMusa acuminata41.1483.1379.21404forward
CNT30234460Sorghum bicolorBrassica oleracea37.6852.6380370forward
CNT30145737Sorghum bicolorMedicago truncatula31.6750.4980.71311forward
CNT30442780Sorghum bicolorAegilops tauschii46.5457.6383.59457forward
CNT3062262Sorghum bicolorArabidopsis lyrata40.5372.6381.91398forward
CNT3079663Sorghum bicolorBrassica juncea35.3465.2380.12347forward
CNT30205386Sorghum bicolorHelianthus annuus33.546.0182.07329forward
CNT30688162Sorghum bicolorTriticum urartu46.3367.7183.74455forward
CNT30350932Sorghum bicolorEragrostis tef43.2895.0885.88425forward
CNT30476941Sorghum bicolorArabidopsis halleri40.5349.6981.91398forward
CNT30354623Sorghum bicolorLactuca sativa31.9848.9981.85314forward
CNT30154777Sorghum bicolorPrunus persica38.0946.7581.82374forward
CNT30408809Sorghum bicolorPapaver somniferum47.5654.0578.8467forward
CNT30573855Sorghum bicolorVitis vinifera42.3669.179.57416forward
CNT30705862Sorghum bicolorPrunus avium27.3925.3381.78269forward
CNT30642025Sorghum bicolorCannabis sativa35.0367.0680.81344forward
CNT30121049Sorghum bicolorCitrus clementina40.9437.1579.6402forward
CNT30149986Sorghum bicolorBrachypodium distachyon62.3268.2383.66612forward
CNT30551544Sorghum bicolorOryza brachyantha41.4558.5685.01407forward

Expression of CNT30366857

Peptides detected in this lncRNA

>peptide 1 (35 aa)
CSLEKSDYMESSGGCLESMHAKGCTWLMKDCSSEK*

Sequence

>CNT30366857
CTGTAGCTTGGAGAAGTCTGACTATATGGAGTCATCCGGGGGCTGCTTGGAGAGTATGCATGCGAAGGGCTGTACTTGGCTGATGAAGGATTGTAGCTCG
GAGAAGTAGGACTGTAGCTCGGAGAAGTAGGACTGTAGCTCGGTGATGTTGGGCTGTATCCTGGCGAAGTAGGGCTGTATGCAGGTGATGTTGGGCTGTA
CGAGGGGGAGGTAGGGCTGTATGAGGGGGATGTTGGGCTGTATGATGGTGATGTAGGGCTATAAGATGGCGAAGTTGGACTGTAAGATGGTGATGTGGGG
CTATATGCGGGAGATGTAGGGCTGTATGCTGGAGATGTAGGGCTATAAACTGGTGAGGTGGGGCTGTAACTTGGTGATGTAGGACTATAACTAGGAGATG
TAGGGCTGTAGCTTGGTGATGTAGGACTGTAGCTAGGAGATGTTGGGCTGTAACTCGGAGATGTGGGTGAGTATGATGGACTGGTAGGCGAGTAAGTCGG
ACTTGTTGGGGAGTAATTCGGGCTTGTGGGACTGTAGGTGGGAGAGCCAGGTGTATATGATGGTGAGGTGGGACTATAGCTTGGCGATGCAGGGCTGTAT
GATGGAGAAAGAGGGCTATATCCTTTCTCTGGGGTGAAAACAGGAGAAGATGGACTGTATCCCCCTGACGATGGAGAGTATTTAGGGTCATCTGTGTTGC
TGGTTCTCCAATTGATTGTGCAGCCACACATCCAATCATCTCACCAGGGGCCACCAAAGACTGAAGAAACCTCGATTCAATCTCACCGATAACCCATTCA
AAAGCTTCCTTTGTAAGCCTGTATTCCTTCAAGACCCTCTTGCTAGCAAACGTGCTACGAAGCAGGATATTAAAGAACAAGGTTGCATTCTTCTGAGCCT
CAATGCTCATGGGATCATCACCAGGTACAACCTTAAGTCTTTCTTGCAGTTTATCTACCGCTTCTACAATTTCCATAGGGTG