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Detailed information on CNT30688162


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT000794, E-value = 2e-31

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30376704Triticum urartuArabidopsis thaliana45.8339.0982.14308forward
CNT30269263Triticum urartuChenopodium quinoa63.6956.1781.54428forward
CNT30304911Triticum urartuTriticum aestivum68.977.4294.82463forward
CNT30400271Triticum urartuTriticum turgidum73.6610092.32495forward
CNT30508904Triticum urartuSolanum lycopersicum40.7744.3482.48274forward
CNT30554721Triticum urartuOryza glaberrima91.5265.7885.69615forward
CNT30145737Triticum urartuMedicago truncatula46.2850.4981.03311forward
CNT30442780Triticum urartuAegilops tauschii100.384.9996.14674forward
CNT30256659Triticum urartuAvena sativa75.4570.9186.79507forward
CNT30312353Triticum urartuCamelina sativa46.7376.5979.94314forward
CNT3062262Triticum urartuArabidopsis lyrata45.8356.280.19308forward
CNT3079663Triticum urartuBrassica juncea45.3957.3382.3305forward
CNT30141877Triticum urartuLolium perenne63.2494.8786.59425forward
CNT3016767Triticum urartuZea mays68.961.2483.15463forward
CNT30605857Triticum urartuGossypium raimondii55.6546.1281.28374forward
CNT30216750Triticum urartuKalanchoe fedtschenkoi23.8132.6583.75160forward
CNT3067979Triticum urartuLeersia perrieri52.5398.0683.85353forward
CNT30713436Triticum urartuMalus domestica golden26.6455.5983.8179forward
CNT30341749Triticum urartuEragrostis tef59.3889.6686.97399forward
CNT30476941Triticum urartuArabidopsis halleri45.8338.4580.52308forward
CNT30366857Triticum urartuSorghum bicolor67.7146.3383.74455forward
CNT30596736Triticum urartuOryza meridionalis98.5187.6881.57662forward
CNT30408809Triticum urartuPapaver somniferum63.9949.7778.6430forward
CNT30573855Triticum urartuVitis vinifera68.4576.4178.91460forward
CNT3051605Triticum urartuAmborella trichopoda62.9563.879.2423forward
CNT30330871Triticum urartuDioscorea rotundata37.3534.7281.27251forward
CNT30150463Triticum urartuBrachypodium distachyon99.47687.43668forward
CNT30103004Triticum urartuOryza rufipogon98.5166.482.78662forward
CNT30577473Triticum urartuOryza barthii44.254.586.87297forward
CNT30498009Triticum urartuDigitaria exilis70.2448.2183.47472forward
CNT30551544Triticum urartuOryza brachyantha95.8392.6681.68644forward
CNT30335475Triticum urartuCynara cardunculus41.3721.484.53278forward

Expression of CNT30688162

Peptides detected in this lncRNA

>peptide 1 (41 aa)
SEKSDCTGSSSLGCLENKHVKDCTWPKKDCSSVKWGCSSVK*

>peptide 2 (60 aa)
MWGCSSGMLASMMDWSESMMDWSGCRKESQAYMMERWGCSWAMQGCMMEKWDCNHVLALG*

>peptide 3 (78 aa)
MTGMSGCMRATWGCMRVMSGCMRAMLGCTREKWGCMMATLGCKMATSDYKPVMLDYSSEMWGYSLVMLGCSSEMWGCS*

Sequence

>CNT30688162
GTTCGGAGAAGTCTGACTGTACGGGCTCATCATCCTTGGGCTGCTTGGAGAATAAGCATGTGAAGGACTGTACTTGGCCGAAGAAGGATTGTAGCTCGGT
GAAGTGGGGCTGTAGTTCGGTGAAGTAGGGCTGTAGCTCGGTGACGTCGGGCTGTAACCAGGCGATGTAGGGCTGTATGCAGGCGATGTAGGGCTGTATG
ACGGGGATGTCGGGCTGTATGAGGGCGACGTGGGGCTGTATGAGGGTGATGTCGGGCTGTATGAGGGCGATGTTGGGCTGTACGAGGGAGAAGTGGGGCT
GTATGATGGCGACGTTGGGCTGTAAGATGGCGACGTCGGACTATAAACCGGTGATGTTGGACTATAGCTCGGAGATGTGGGGCTATAGCTTGGTGATGTT
GGGCTGTAGCTCGGAGATGTGGGGCTGTAGCTAGGAGATGTGGGGCTGTAGCTCGGGGATGTTGGCGAGTATGATGGACTGGTCGGAGAGTATGATGGAC
TGGTCGGGCTGTAGGAAGGAGAGCCAGGCGTATATGATGGAGAGGTGGGGCTGTAGCTGGGCGATGCAGGGCTGTATGATGGAGAAGTGGGACTGTAACC
ATGTCCTGGCCCTGGGCTGAACACCGGAGAAGATGGACTGTAACCACCTCCAGAGGATGGGCTGTAGTTTGA