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Detailed information on CNT30500604


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSTUT001430, E-value = 3e-76

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640872Coffea canephoraNymphaea colorata73.9860.1180.44455forward
CNT30536082Coffea canephoraEucalyptus grandis47.6449.4982.25293forward
CNT30315993Coffea canephoraCorylus avellana88.9454.5481.54547forward
CNT30516897Coffea canephoraJuglans regia79.3555.280.53488forward
CNT30616511Coffea canephoraSesamum indicum83.2578.4183.98512forward
CNT30267761Coffea canephoraChenopodium quinoa79.8460.1779.23491forward
CNT3021339Coffea canephoraCitrullus lanatus83.0980.680.04511forward
CNT30195835Coffea canephoraPisum sativum40.3397.6480.65248forward
CNT30490956Coffea canephoraOlea europaea57.8984.7681.74356forward
CNT30708216Coffea canephoraGlycine max68.1374.9680.43419forward
CNT3042412Coffea canephoraPrunus dulcis73.0160.5981.51449forward
CNT30308418Coffea canephoraTriticum aestivum39.3533.5682.23242forward
CNT30400271Coffea canephoraTriticum turgidum39.3548.8981.82242forward
CNT30591924Coffea canephoraMusa acuminata51.5459.4782.33317forward
CNT30554634Coffea canephoraOryza glaberrima41.330.7182.68254forward
CNT30256659Coffea canephoraAvena sativa40.3334.6980.24248forward
CNT30312132Coffea canephoraCamelina sativa65.261.8882.04401forward
CNT3062262Coffea canephoraArabidopsis lyrata59.8467.1583.15368forward
CNT3076593Coffea canephoraBrassica juncea70.5779.4982.26434forward
CNT30263459Coffea canephoraBrassica rapa63.7472.4682.65392forward
CNT3016767Coffea canephoraZea mays45.0436.6480.87277forward
CNT30607989Coffea canephoraGossypium raimondii88.1377.6578.78542forward
CNT3067990Coffea canephoraLeersia perrieri36.9159.5881.06227forward
CNT30205024Coffea canephoraHelianthus annuus92.3686.9879.4568forward
CNT30625720Coffea canephoraDaucus carota81.7944.0177.93503forward
CNT30687113Coffea canephoraTriticum urartu54.9663.5380.47338forward
CNT30350936Coffea canephoraEragrostis tef53.3372.0981.1328forward
CNT30476941Coffea canephoraArabidopsis halleri67.1551.5683.78413forward
CNT30366537Coffea canephoraSorghum bicolor41.329.1381.5254forward
CNT30596736Coffea canephoraOryza meridionalis33.9827.6883.25209forward
CNT30354836Coffea canephoraLactuca sativa20.8122.1885.16128forward
CNT30370935Coffea canephoraOryza glumipatula36.9123.4583.7227forward
CNT30154791Coffea canephoraPrunus persica88.6270.1481.1545forward
CNT30410142Coffea canephoraPapaver somniferum61.357.2979.58377forward
CNT30705859Coffea canephoraPrunus avium80.8166.5381.09497forward
CNT30642143Coffea canephoraCannabis sativa48.9473.2482.72301forward
CNT3027877Coffea canephoraTheobroma cacao46.6772.6682.93287forward
CNT3023412Coffea canephoraPopulus trichocarpa63.5869.279.8391forward
CNT30121168Coffea canephoraCitrus clementina53.0130.782.52326forward
CNT3035176Coffea canephoraCucumis melo68.1376.1879.71419forward
CNT30330871Coffea canephoraDioscorea rotundata32.5227.6682.5200forward
CNT30150463Coffea canephoraBrachypodium distachyon42.7629.9282.51263forward
CNT30103004Coffea canephoraOryza rufipogon36.4222.4781.7224forward
CNT30577473Coffea canephoraOryza barthii39.0244.0478.75240forward
CNT30584421Coffea canephoraEchinochloa crusgalli41.331.5181.1254forward
CNT30558075Coffea canephoraPanicum hallii42.7633.3380.61263forward
CNT30551544Coffea canephoraOryza brachyantha41.7936.9884.05257forward
CNT30335475Coffea canephoraCynara cardunculus83.0939.3477.69511forward
CNT3049385Coffea canephoraCucumis sativus68.6253.2880.81422forward

Expression of CNT30500604

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MLGYKMGRSGCMLGRSGCMLGKWGYNSERSDYNWEK*

Sequence

>CNT30500604
ATGGGCTTGAAGGTGACAGCTTCGGACTAGTTGGGGAGTATGCAAGTGAAGGGCTGTACCTTGCCGAGGGATTGTAGCTAGGAGACGTGGGACTATAGCT
CGGTGAGGTAGGGCTATAACTTGGGGAGGTGGGGCTGTAACCCGGAGAAGTTGGACTATATGCAGGTGATGTGGGACTGTATGATGGAGAGGTTGGGCTA
TAAGAAGGTGAGGTAGGGCTGTAAGAAGGTGATGTTGGGCTATAAGATGGGGAGGTCGGGCTGTATGCTGGGGAGGTCGGGCTGTATGCTGGGGAAGTGG
GGCTATAACTCGGAGAGGTCGGACTATAACTGGGAGAAGTAGGACTATAACTTGGAGATGTTGGGCTATAACTGGGAGATGTGGGGCTGTAGCTGGGAGA
AGTGGGTGAGTATGAAGGACTAGTTGGAGAATAAGCAGGACTAGTTGGGCTATATCCAGGAGAACTGGGACTATAAGTAGGAGAAGTTGGACTATAACCA
GGGGAAGTGGGGCTGTAACCAGGGGATGTAGGGCTGTAACCTGGAGAAGTGGGGCTGTAACCAGGGGATGAGGGGCTGTATCCAAGGGATGATGGGCTAT
AACCTGGAGATGATT