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Detailed information on CNT30234460


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316024Brassica oleraceaCorylus avellana61.7453.9181.11434forward
CNT30376704Brassica oleraceaArabidopsis thaliana101.5690.6185.99714forward
CNT30269243Brassica oleraceaChenopodium quinoa64.8650.0581.14456forward
CNT3021339Brassica oleraceaCitrullus lanatus60.4667.0383.53425forward
CNT30727661Brassica oleraceaCorchorus capsularis79.6689.4680.36560forward
CNT30378908Brassica oleraceaManihot esculenta47.0835.0685.5331forward
CNT30628702Brassica oleraceaVigna unguiculata59.661.1780.43419forward
CNT3042435Brassica oleraceaPrunus dulcis74.1175.2981.57521forward
CNT3091732Brassica oleraceaSolanum tuberosum79.2348.979.71557forward
CNT30304911Brassica oleraceaTriticum aestivum38.2644.9882.53269forward
CNT30400271Brassica oleraceaTriticum turgidum38.2654.3482.53269forward
CNT30559890Brassica oleraceaActinidia chinensis70.5572.6281.85496forward
CNT30554721Brassica oleraceaOryza glaberrima49.3637.1181.84347forward
CNT30145737Brassica oleraceaMedicago truncatula43.149.1981.85303forward
CNT30442780Brassica oleraceaAegilops tauschii49.6444.0180.23349forward
CNT30256659Brassica oleraceaAvena sativa37.4136.7880.61263forward
CNT30312132Brassica oleraceaCamelina sativa81.3788.2786.36572forward
CNT3062262Brassica oleraceaArabidopsis lyrata73.2693.9887.57515forward
CNT3076593Brassica oleraceaBrassica juncea77.6710095.42546forward
CNT30263540Brassica oleraceaBrassica rapa81.9389.398.09576forward
CNT30141877Brassica oleraceaLolium perenne37.8459.3881.2266forward
CNT3016767Brassica oleraceaZea mays48.9345.580.81344forward
CNT30605857Brassica oleraceaGossypium raimondii100.5787.1879.35707forward
CNT30216750Brassica oleraceaKalanchoe fedtschenkoi55.3379.3979.18389forward
CNT30687113Brassica oleraceaTriticum urartu48.0863.5381.66338forward
CNT30350936Brassica oleraceaEragrostis tef47.6573.6381.79335forward
CNT30366857Brassica oleraceaSorghum bicolor52.6337.6880370forward
CNT30596736Brassica oleraceaOryza meridionalis3431.6682.85239forward
CNT30370935Brassica oleraceaOryza glumipatula35.725.9382.47251forward
CNT30408809Brassica oleraceaPapaver somniferum73.9760.1979.62520forward
CNT30705868Brassica oleraceaPrunus avium89.0558.9582.27626forward
CNT30642025Brassica oleraceaCannabis sativa43.8160.0484.42308forward
CNT3051605Brassica oleraceaAmborella trichopoda49.7952.7979.14350forward
CNT30120999Brassica oleraceaCitrus clementina67.2835.2580.55473forward
CNT3035176Brassica oleraceaCucumis melo66.8685.4581.49470forward
CNT30150463Brassica oleraceaBrachypodium distachyon48.0838.4580.18338forward
CNT30103220Brassica oleraceaOryza rufipogon48.9337.0382.56344forward
CNT30584450Brassica oleraceaEchinochloa crusgalli46.843.9383.28329forward
CNT30498009Brassica oleraceaDigitaria exilis48.9335.1481.4344forward
CNT30176441Brassica oleraceaVigna angularis62.1672.2379.63437forward
CNT30558075Brassica oleraceaPanicum hallii41.6837.1481.91293forward
CNT30551544Brassica oleraceaOryza brachyantha43.8144.3281.49308forward
CNT3049544Brassica oleraceaCucumis sativus57.4750.4483.66404forward

Expression of CNT30234460

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MGCSLEMKKEKTPFHQHMEKTEHLTLETTAYLDSGGSLGTSCFHDKEFLTLAS

>peptide 2 (46 aa)
RRVSQRWTVFSRLRVVAWRCRTVTRRRWTVAWRCRAVARRRRAVCR*

>peptide 3 (36 aa)
MQEKLDCKQVKLDCNSGMLGCSLETLDCSLETLGCS*

Sequence

>CNT30234460
TAGGAGAGTAAGCCAGAGATGGACTGTATTTAGCAGACTGAGGGTTGTAGCTTGGAGATGTCGGACCGTAACTAGGAGACGTTGGACTGTAGCTTGGAGA
TGTAGGGCTGTAGCCAGGAGACGTAGGGCTGTATGCAGGTGAAGTAGGGCTGTAAGAAGGAGATGTTGGACTGTAGGAGGGTGAAGTAGGGCTGTAAGAA
GGCGATGTCGGACTGTAAGATGGTGAAGTTGGACTGTAAGATGGAGAGGTAGGGCTGTATGCAGGAGAAGTTGGACTGTAAGCAGGTGAAGTTGGACTGT
AACTCGGGGATGTTGGGCTGTAGCTTGGAGACGTTGGACTGTAGCTTGGAGACGTTGGGCTGTAGCTAGGAGACGTTGGGCTGTAGCTAGGGGAGGTGGG
AGAATATGAAGGACTTGTTGGAGAATAAGCAGGGCTAGTTGGGCTATAGCCAGGAGAACTAGGACTGTACGTGGGAGAAGTGGGACTATAGCCAGGAGAA
GTCGGACTGTATCCAGGAGAAGTAGGACTGTAACCAGGAGAAGATGGGCTGTAGCCTGGAGATGAAGAAGGAGAAAACGCCATTCCACCAACATATGGAG
AAAACTGAGCATCTGACATTGGAGACAACCGCATATTTGGACTCAGGAGGTAGTTTGGGGACATCATGCTTTCATGATAAGGAGTTCCTGACATTGGCGA
GCG