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Detailed information on CNT30267761


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT000794, E-value = 3e-46

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523536Chenopodium quinoaSetaria italica50.2572.5781.46410forward
CNT30640872Chenopodium quinoaNymphaea colorata66.7971.9979.45545forward
CNT30536042Chenopodium quinoaEucalyptus grandis57.685.4578.94470forward
CNT30376158Chenopodium quinoaArabidopsis thaliana60.1754.9281.26491forward
CNT30500604Chenopodium quinoaCoffea canephora60.1779.8479.23491forward
CNT3021333Chenopodium quinoaCitrullus lanatus63.8588.0179.85521forward
CNT30378927Chenopodium quinoaManihot esculenta37.7549.7680.84308forward
CNT30403468Chenopodium quinoaBeta vulgaris95.22100.3980.57777forward
CNT30524942Chenopodium quinoaPhaseolus vulgaris47.357.5380.57386forward
CNT30628702Chenopodium quinoaVigna unguiculata56.9967.8879.14465forward
CNT3042412Chenopodium quinoaPrunus dulcis57.9763.8381.18473forward
CNT30235097Chenopodium quinoaBrassica oleracea68.3869.6680.29558forward
CNT30443444Chenopodium quinoaAegilops tauschii40.5635.5581.27331forward
CNT3062262Chenopodium quinoaArabidopsis lyrata54.6681.3980.94446forward
CNT30263459Chenopodium quinoaBrassica rapa63.9796.4980.08522forward
CNT30205370Chenopodium quinoaHelianthus annuus32.640.7483.83266forward
CNT30476941Chenopodium quinoaArabidopsis halleri60.2961.4281.1492forward
CNT30596736Chenopodium quinoaOryza meridionalis39.2242.3882.19320forward
CNT30370935Chenopodium quinoaOryza glumipatula39.2233.0682.5320forward
CNT30154712Chenopodium quinoaPrunus persica62.0164.9680.83506forward
CNT30705868Chenopodium quinoaPrunus avium63.8549.0679.65521forward
CNT30109704Chenopodium quinoaOryza longistaminata28.5541.9183.26233forward
CNT30330867Chenopodium quinoaDioscorea rotundata34.4438.8781.49281forward
CNT30149777Chenopodium quinoaBrachypodium distachyon35.1731.1684.32287forward
CNT30103220Chenopodium quinoaOryza rufipogon46.9441.2381.2383forward
CNT30577473Chenopodium quinoaOryza barthii39.5859.2782.04323forward

Expression of CNT30267761

Peptides detected in this lncRNA

>peptide 1 (89 aa)
MWGYSLVRWESKMGLWVNMPGLLDYSQETQDCKSGKLDYIQERLDYILEKLGYILEKWGCNQVNLVRDKQEMKQERRPCRQQMEKMKHH*

>peptide 2 (50 aa)
MSDIWAKQVARRHHTLMVRCSRNGRPSRCHPKFQAFHITWKVDFNSMLQHF

>peptide 3 (57 aa)
MMEMWGCKMEMWGCMMEMSGCTTEMSGCRLEMSGCKLETWGCRLEMWGYSLERWGCS*

>peptide 4 (35 aa)
GCRDWMVIFLGCLESMPVMDCIWLKGYSLEKLDYN*

Sequence

>CNT30267761
GGGCTGTAGGGACTGGATGGTGATATTCTTGGGCTGCTTGGAGAGTATGCCAGTGATGGACTGTATTTGGCTGAAGGGTTATAGCTTGGAGAAGTTGGAC
TATAACTAGGTGATGTAGGGCTATAACTTGGTGATGTAGGGCTATATCCTGGAGATGTAGGGCTGTAAGCAGGAGATGTAGGGCTGTACGATGGAGAAGT
AGGGCTGTATGATGGAGATGTGGGGCTGTAAGATGGAGATGTGGGGCTGTATGATGGAGATGTCGGGCTGTACGACGGAGATGTCGGGCTGTAGGCTGGA
GATGTCGGGCTGTAAGCTGGAGACGTGGGGCTGTAGGCTGGAGATGTGGGGCTATAGCTTGGAGAGGTGGGGCTGTAGCTAGGAGATGTGGGGCTATAGC
TTGGTGAGGTGGGAGAGTAAGATGGGCTTGTGGGTGAATATGCCGGGCTTGTTGGACTATAGCCAGGAGACCCAGGACTGTAAGTCGGGGAAGTTGGACT
ATATCCAGGAGAGGTTGGACTATATCCTGGAGAAGTTGGGCTATATCCTGGAGAAGTGGGGCTGTAACCAGGTGAATTTGGTGAGAGATAAGCAGGAGAT
GAAGCAGGAGAGAAGGCCATGCCGCCAACAAATGGAGAAAATGAAGCATCATTGATGGGCGAATGTCGGATATTTGGGCTAAGCAAGTAGCTAGGAGACA
TCATACTCTCATGGTAAGGTGTTCCAGAAATGGGCGACCGAGCAGGTGTCATCCCAAATTCCAAGCCTTCCACATAACTTGGAAGGTGGACTTCAATAGC
ATGCTGCAACATTTCC