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Detailed information on CNT30121168


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT000794, E-value = 9e-56

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30500604Citrus clementinaCoffea canephora30.753.0182.52326forward
CNT30628784Citrus clementinaVigna unguiculata44.1661.6381.02469forward
CNT30307041Citrus clementinaTriticum aestivum23.3546.2781.45248forward
CNT30399358Citrus clementinaTriticum turgidum23.3542.6981.45248forward
CNT30311656Citrus clementinaCamelina sativa40.7778.0280.83433forward
CNT3062262Citrus clementinaArabidopsis lyrata34.0966.0683.43362forward
CNT30713436Citrus clementinaMalus domestica golden29.5797.5280.57314forward
CNT30476898Citrus clementinaArabidopsis halleri32.3974.6283.72344forward
CNT30408809Citrus clementinaPapaver somniferum48.7859.9579.34518forward
CNT30573870Citrus clementinaVitis vinifera48.7873.4882.24518forward
CNT30642025Citrus clementinaCannabis sativa42.2887.5283.52449forward
CNT30497833Citrus clementinaDigitaria exilis33.0539.880.63351forward
CNT30335475Citrus clementinaCynara cardunculus40.9633.4981.84435forward

Expression of CNT30121168

Peptides detected in this lncRNA

>peptide 1 (28 aa)
MIRSPRHRRTSRCHAKLQTFHITRKLKFD

>peptide 2 (71 aa)
MLGCRKERLGCTMVRWGCMQVRWGYMPVRWGYSLVKLDCNWEKWGCNLERSGCSLGMLGCNLGRLGYSLVK*

>peptide 3 (74 aa)
NNRDKIINNLIPSKSNPQLQQVLGSTDISVYRILSKTRPNKLDTAFNTNIRLDHISHYGLPVIWRCRAVRTGRR*

Sequence

>CNT30121168
AAAACAACAGAGATAAAATCATTAATAATTTAATCCCATCCAAGTCCAATCCCCAGCTACAGCAAGTCTTAGGTTCAACAGATATTTCAGTATATAGAAT
TCTATCAAAAACAAGACCTAATAAATTGGATACAGCTTTTAACACAAACATTAGACTTGACCACATATCGCACTATGGCTTACCTGTAATTTGGAGATGT
AGGGCTGTACGGACTGGCAGGAGATAATCTTGGACTACTTGGTGAGTAGGCCAGCGACGGACTGTATTTGGCAGACTGAGGATTGTAGCTTGGGGATGTA
GGACTATAGGTTGGTGAAGTTGGGCTATAACTTGGTGAAGTTGGACTATAACCAGGAGAAGTGGGGCTATAGGCTGGTGAAGTGGGGCTGTACGATGGAG
AAGTGGGGCTGTATGACGGTGAGGTAGGGCTGTACGAAGGTGATGTTGGGCTGTAGGAAGGAGAGGTTGGGCTGTACGATGGTGAGGTGGGGCTGTATGC
AGGTGAGGTGGGGCTATATGCCGGTGAGGTGGGGCTATAGCTTGGTGAAGTTGGACTGTAACTGGGAGAAGTGGGGCTGTAACTTGGAGAGGTCGGGCTG
TAGCTTGGGGATGTTGGGCTGTAACTTGGGGAGGTTGGGCTATAGCTTGGTGAAGTAGGTGAGTACGATGGACTGGTAGGAGAATAGGCAGGACTGGTTG
GACTATAACCAGGAGAACTTGGACTATAAGTTGGTGAGGTAGGGCTATATCCAGGCGAGGTGGGACTGTATCCAGGTGAAGTTGGGCTGTATCCAGGTGA
CGTGGGACTGTATCCAGGAGATGACGGACTGTAGCCTGGTGATGATGGGCTGTATCCAGGTGATGAAGTAGGAGAGAAGGCCATTCCACCAACATAAGGA
GAAAACTGGGCATCCGTGACCGGGGACAGACGGAGATTTGGGCTAAACAAGTAACCTGGAGACATCATGCCATCATGATAAGGAGTCCCAGACACCGGAG
AACGAGCAGGTGTCATGCCAAACTCCAGACCTTCCATATAACTAGGAAGCTGAAGTTCGATG