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Detailed information on CNT30516792


BLAST search results

BLAST vs Swiss-Prot:
sp|P18616|NRPB1_ARATH, E-value = 1e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640872Juglans regiaNymphaea colorata51.4660.579.04458forward
CNT30536082Juglans regiaEucalyptus grandis64.2796.6282.17572forward
CNT30316118Juglans regiaCorylus avellana64.2780.1187.41572forward
CNT30700805Juglans regiaQuercus lobata27.1979.8789.26242forward
CNT30376158Juglans regiaArabidopsis thaliana82.8182.4480.19737forward
CNT30616482Juglans regiaSesamum indicum77.5345.2581.74690forward
CNT30269243Juglans regiaChenopodium quinoa96.2994.0779.81857forward
CNT3021339Juglans regiaCitrullus lanatus69.19782.11615forward
CNT30727660Juglans regiaCorchorus capsularis60.5698.5483.49539forward
CNT30378927Juglans regiaManihot esculenta64.2792.4182.17572forward
CNT30628927Juglans regiaVigna unguiculata45.3972.1481.93404forward
CNT30195835Juglans regiaPisum sativum28.5410082.28254forward
CNT30489004Juglans regiaOlea europaea28.9942.0284.88258forward
CNT3042435Juglans regiaPrunus dulcis78.76101.380.31701forward
CNT30307041Juglans regiaTriticum aestivum29.8949.6383.46266forward
CNT30400271Juglans regiaTriticum turgidum32.4758.3883.04289forward
CNT30559890Juglans regiaActinidia chinensis38.9950.8185.3347forward
CNT30591924Juglans regiaMusa acuminata57.1995.579.57509forward
CNT3087851Juglans regiaVigna radiata79.4477.3581.9707forward
CNT30554721Juglans regiaOryza glaberrima41.3539.3680.43368forward
CNT30145737Juglans regiaMedicago truncatula50.1172.481.61446forward
CNT30256659Juglans regiaAvena sativa35.2843.9281.53314forward
CNT30311656Juglans regiaCamelina sativa50.1180.3681.84446forward
CNT3062262Juglans regiaArabidopsis lyrata42.0268.2581.55374forward
CNT3076593Juglans regiaBrassica juncea51.0183.1582.82454forward
CNT30263540Juglans regiaBrassica rapa68.5494.5780.16610forward
CNT30468525Juglans regiaSaccharum spontaneum34.2736.1881.64305forward
CNT3016767Juglans regiaZea mays50.4559.3981.07449forward
CNT30605857Juglans regiaGossypium raimondii93.15102.2281.54829forward
CNT30648676Juglans regiaRosa chinensis85.51102.1579.89761forward
CNT30688581Juglans regiaTriticum urartu32.5849.9182.41290forward
CNT30476941Juglans regiaArabidopsis halleri63.9371.0480.84569forward
CNT30408809Juglans regiaPapaver somniferum89.3392.0178.87795forward
CNT30573855Juglans regiaVitis vinifera63.0393.1981.28561forward
CNT30641843Juglans regiaCannabis sativa54.0410081.7481forward
CNT3028162Juglans regiaTheobroma cacao56.5289.6683.1503forward
CNT3023318Juglans regiaPopulus trichocarpa38.9954.2283.86347forward
CNT30121049Juglans regiaCitrus clementina99.2181.6182.22883forward
CNT3035176Juglans regiaCucumis melo51.1282.7382.42455forward
CNT30103004Juglans regiaOryza rufipogon37.6433.680.9335forward
CNT30584450Juglans regiaEchinochloa crusgalli46.0754.7480410forward
CNT30497905Juglans regiaDigitaria exilis34.2733.7880.66305forward
CNT30176441Juglans regiaVigna angularis36.2953.3982.04323forward
CNT30551544Juglans regiaOryza brachyantha39.5550.6581.82352forward
CNT30114394Juglans regiaFicus carica31.5747.2383.27281forward
CNT30335475Juglans regiaCynara cardunculus54.6137.4180.45486forward
CNT3049385Juglans regiaCucumis sativus55.1761.9982.48491forward

Expression of CNT30516792

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MMDCSQEMMGCSLEMKPEKTPFHQHKEKTEHL*

>peptide 2 (74 aa)
MMEMWGCMRVRSGCKMEKSGCRMEKSGCRMEKWGCMQVKWGCTQVKWGCKLVKWGYSSVMLGCKWEKWGYSWER*

Sequence

>CNT30516792
TGGCATACCTGTAATTCGGAGATGTAGGACTATATGGACTGGATGGGGACAATCTTGGACTGCTTGGTGAGTATGCCAGTGAAGGGCTATATTTAGCAGA
CTGAGGATTATAACTGGGAGATGTAGGGCTATAGCTAGGTGAGGTTGGGCTATAGCTTGGAGAAGTTGGACTGTAACCTGGTGATGTGGGGCTATAGGCT
GGTGAGGTAGGGCTGTATGATGGAGATGTGGGGCTGTATGAGGGTGAGGTCGGGCTGTAAGATGGAGAAGTCGGGCTGTAGGATGGAGAAGTCGGGCTGT
AGGATGGAGAAGTGGGGCTGTATGCAGGTGAAGTGGGGCTGTACGCAGGTGAAGTGGGGCTGTAAGCTGGTGAAGTGGGGCTATAGCTCGGTGATGTTGG
GCTGTAAGTGGGAGAAGTGGGGCTATAGCTGGGAGAGGTAGGGCTGTAGCTAGGAGATGTGGGGCTATAGCTGGGAGAGGTGGGCGAGTAAGATGGACTT
GTAGGCGAATAGGCAGGACTGGTTGGACTATAACCCGGAGAACTAGGACTATAAGTAGGGGAAGTGGGGCTATAGCCGGGAGAGGTGGGACTATATCCAG
GGGATGTAGGACTATATCCTGGGGATGATGGACTGTAGCCAGGAGATGATGGGCTGTAGCCTGGAGATGAAGCCGGAGAAAACGCCATTCCACCAACATA
AGGAGAAAACTGAGCATCTGTAATGGGCGACAGTCGGAGATTTGGGCTCAGCAAATAACTTGGAGACATCAAGCCCTCATGATAGGGAGTTCCGGAGACT
GGAGAGTGGGAAGGTGTCATGCCAAAATCCAAACCATCCATATAACTAGGTAGCTGGAGTTCAATAGCATTCTTCAACATCTCATCATTG