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Detailed information on CNT30103004


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT000794, E-value = 3e-52

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675703Oryza rufipogonSetaria viridis26.7895.0281.27267forward
CNT30523536Oryza rufipogonSetaria italica31.1955.0483.6311forward
CNT30536082Oryza rufipogonEucalyptus grandis22.4737.8482.59224forward
CNT30549166Oryza rufipogonIpomoea triloba25.7838.2482.1257forward
CNT30516792Oryza rufipogonJuglans regia33.637.6480.9335forward
CNT30500604Oryza rufipogonCoffea canephora22.4736.4281.7224forward
CNT3021339Oryza rufipogonCitrullus lanatus32.751.4280.67326forward
CNT30378908Oryza rufipogonManihot esculenta37.0139.0979.67369forward
CNT30403468Oryza rufipogonBeta vulgaris23.7730.6280.59237forward
CNT30506121Oryza rufipogonNicotiana attenuata24.5759.1882.45245forward
CNT30710467Oryza rufipogonGlycine max20.6628.4983.98206forward
CNT3091554Oryza rufipogonSolanum tuberosum32.747.3881.6326forward
CNT30193210Oryza rufipogonSecale cereale17.6582.2488.07176forward
CNT30304911Oryza rufipogonTriticum aestivum48.9581.6182.38488forward
CNT30400271Oryza rufipogonTriticum turgidum49.4599.685.6493forward
CNT30508904Oryza rufipogonSolanum lycopersicum27.2844.0183.82272forward
CNT30554634Oryza rufipogonOryza glaberrima83.05100.1298.07828forward
CNT30442780Oryza rufipogonAegilops tauschii77.2397.182.08770forward
CNT30668234Oryza rufipogonTriticum dicoccoides45.7477.5584.65456forward
CNT3062262Oryza rufipogonArabidopsis lyrata32.258.5881.62321forward
CNT3079663Oryza rufipogonBrassica juncea25.4847.7482.68254forward
CNT30263540Oryza rufipogonBrassica rapa24.8738.4583.06248forward
CNT30141877Oryza rufipogonLolium perenne44.6399.3383.82445forward
CNT30608057Oryza rufipogonGossypium raimondii29.6949.9283.78296forward
CNT30216750Oryza rufipogonKalanchoe fedtschenkoi26.9854.980.67269forward
CNT3067990Oryza rufipogonLeersia perrieri38.1199.7489.74380forward
CNT30205386Oryza rufipogonHelianthus annuus26.0836.3681.15260forward
CNT30688162Oryza rufipogonTriticum urartu66.498.5182.78662forward
CNT30341751Oryza rufipogonEragrostis tef45.6494.0187.47455forward
CNT30596736Oryza rufipogonOryza meridionalis77.83102.7892.14776forward
CNT30354603Oryza rufipogonLactuca sativa33.649.4880.3335forward
CNT30370935Oryza rufipogonOryza glumipatula99.2102.1792.72989forward
CNT30705862Oryza rufipogonPrunus avium32.930.8980.49328forward
CNT30642028Oryza rufipogonCannabis sativa37.9173.8380.42378forward
CNT3028162Oryza rufipogonTheobroma cacao23.3741.5383.69233forward
CNT30109704Oryza rufipogonOryza longistaminata22.5740.47100225forward
CNT3035176Oryza rufipogonCucumis melo35.5164.3679.38354forward
CNT30577473Oryza rufipogonOryza barthii31.3957.4397.76313forward
CNT30498009Oryza rufipogonDigitaria exilis98.5100.3182.69982forward
CNT30558075Oryza rufipogonPanicum hallii79.44100.3880.05792forward
CNT30335475Oryza rufipogonCynara cardunculus26.0820.0281.92260forward

Expression of CNT30103004

Peptides detected in this lncRNA

>peptide 1 (56 aa)
CNLVKSDCKGSALGCLESTRGKDCTWPKKDCSLVKLDCNLVKLGCSLEMSGCNQVM*

>peptide 2 (35 aa)
MVSQRWASVLVSCRSPGLQHSLGVEVRWPAAASDH*

>peptide 3 (63 aa)
MIWCPRDGRACWCHAEVQAFNIAWELKFDGLLQHLIIEIQCTASCTDRSKLAKHNVLSDTSQVV

>peptide 4 (63 aa)
MMEKWDCSWVKQDYMMEKLGCILALDCKPEKMDCNHPLTMECSLVKVLVRKPFLQHMARTEHL*

>peptide 5 (88 aa)
MQEMSDCMRVMSDCMRGKWGCKTETLDCMMVMWGCKMVMWGYKMVMWGCMQEKLDYMQEKSDYKLVMSDCSSEKWDYNLARSGCNLEM*

Sequence

>CNT30103004
CTGTAATTTGGTGAAGTCTGACTGTAAGGGCTCAGCCTTGGGCTGCTTGGAGAGTACGCGTGGGAAGGACTGTACTTGGCCGAAGAAGGATTGTAGCTTG
GTGAAGTTGGACTGTAATTTGGTGAAGTTGGGCTGTAGCTTGGAGATGTCGGGCTGTAACCAGGTGATGTAGGGCTGTATGCAGGAGATGTCGGACTGTA
TGAGGGTGATGTCGGACTGTATGAGGGGGAAGTGGGGCTGTAAGACGGAGACGTTGGACTGTATGATGGTGATGTGGGGCTGTAAGATGGTGATGTGGGG
CTATAAGATGGTGATGTGGGGCTGTATGCAGGAGAAGTTGGACTATATGCAGGAGAAGTCGGACTATAAACTGGTGATGTCGGACTGTAGCTCGGAGAAG
TGGGACTATAACTTGGCGAGGTCGGGCTGTAACTTGGAGATGTAGGGCTATAGCTAGGTGATGTAGGGCTGTAGCTTGGAGATGTTGGCGAGTATGACGG
ACTGGTAGGTGAGTATGATGGACTTGTAGGGGAGTAAGTAGGAGAGCCAGGTGTATATGATGGAGAAGTGGGACTGTAGCTGGGTGAAGCAGGACTATAT
GATGGAGAAGTTGGGCTGTATCCTGGCCCTGGACTGTAAACCGGAGAAGATGGACTGTAACCACCCCCTGACGATGGAGTGTAGCCTGGTGAAGGTACTG
GTGAGAAAGCCATTCCTCCAACATATGGCGAGAACTGAGCATCTGTAATGGGGGAAGCCCTGATGTTTGGACTTAGCAGGTAGCTCGGTGACATCATTCC
TTCATGATATGGTGTCCCAGAGATGGGCGAGCGTGCTGGTGTCATGCCGAAGTCCAGGCCTTCAACATAGCTTGGGAGTTGAAGTTCGATGGCCTGCTGC
AGCATCTGATCATTGAGATACAATGCACAGCCTCCTGTACCGATAGGAGCAAGCTGGCCAAGCATAATGTTCTCAGTGACACCTCTCAGGTAGTCAG