« Back to Oryza glumipatula search


Detailed information on CNT30370935


BLAST search results

BLAST vs Swiss-Prot:
sp|P18616|NRPB1_ARATH, E-value = 1e-40

BLAST vs NONCODE:
NONSLYT000794, E-value = 7e-38

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675703Oryza glumipatulaSetaria viridis22.937981.98222forward
CNT30523536Oryza glumipatulaSetaria italica29.7550.9782.99288forward
CNT30640872Oryza glumipatulaNymphaea colorata62.1979.5278.74602forward
CNT30536082Oryza glumipatulaEucalyptus grandis2540.8882.23242forward
CNT30316024Oryza glumipatulaCorylus avellana32.1338.6380.71311forward
CNT30549166Oryza glumipatulaIpomoea triloba2536.0182.23242forward
CNT30516897Oryza glumipatulaJuglans regia25.9328.3981.67251forward
CNT30376704Oryza glumipatulaArabidopsis thaliana26.5532.6182.1257forward
CNT30500604Oryza glumipatulaCoffea canephora23.4536.9183.7227forward
CNT30616460Oryza glumipatulaSesamum indicum37.425.2380.94362forward
CNT30267761Oryza glumipatulaChenopodium quinoa33.0639.2282.5320forward
CNT3021339Oryza glumipatulaCitrullus lanatus26.2440.0680.71254forward
CNT30727661Oryza glumipatulaCorchorus capsularis33.3751.682.97323forward
CNT30378908Oryza glumipatulaManihot esculenta42.4643.5479.08411forward
CNT30524942Oryza glumipatulaPhaseolus vulgaris26.8638.7580.38260forward
CNT30628902Oryza glumipatulaVigna unguiculata30.8967.4980.6299forward
CNT30195835Oryza glumipatulaPisum sativum22.2184.6581.4215forward
CNT30490956Oryza glumipatulaOlea europaea27.1762.6280.23263forward
CNT30506120Oryza glumipatulaNicotiana attenuata31.251.6281.13302forward
CNT30710467Oryza glumipatulaGlycine max20.3527.2583.76197forward
CNT3042435Oryza glumipatulaPrunus dulcis28.7240.1782.37278forward
CNT3091337Oryza glumipatulaSolanum tuberosum28.133.3381.62272forward
CNT30193210Oryza glumipatulaSecale cereale18.1882.2488.07176forward
CNT30304911Oryza glumipatulaTriticum aestivum47.7377.2686.15462forward
CNT30400472Oryza glumipatulaTriticum turgidum47.4246.0484.75459forward
CNT30559890Oryza glumipatulaActinidia chinensis25.6236.3182.66248forward
CNT30592011Oryza glumipatulaMusa acuminata25.3160.4983.27245forward
CNT3087851Oryza glumipatulaVigna radiata26.5528.1282.49257forward
CNT30234460Oryza glumipatulaBrassica oleracea25.9335.782.47251forward
CNT30508904Oryza glumipatulaSolanum lycopersicum28.144.0182.72272forward
CNT30554779Oryza glumipatulaOryza glaberrima102.17105.7890.8989forward
CNT30145737Oryza glumipatulaMedicago truncatula29.0345.6281.85281forward
CNT30442780Oryza glumipatulaAegilops tauschii56.268.682.9544forward
CNT30256659Oryza glumipatulaAvena sativa72.4298.0485.02701forward
CNT30668234Oryza glumipatulaTriticum dicoccoides47.1177.5584.65456forward
CNT30311681Oryza glumipatulaCamelina sativa30.2740.8182.59293forward
CNT3062262Oryza glumipatulaArabidopsis lyrata26.5546.982.1257forward
CNT3076593Oryza glumipatulaBrassica juncea28.149.8281.25272forward
CNT30263848Oryza glumipatulaBrassica rapa22.2150.8384.19215forward
CNT30468644Oryza glumipatulaSaccharum spontaneum80.1782.4781.7776forward
CNT30141877Oryza glumipatulaLolium perenne46.2810085.94448forward
CNT3017147Oryza glumipatulaZea mays30.6841.5483.16297forward
CNT30608057Oryza glumipatulaGossypium raimondii33.0653.9683.75320forward
CNT30216750Oryza glumipatulaKalanchoe fedtschenkoi29.6558.5779.79287forward
CNT3067990Oryza glumipatulaLeersia perrieri39.2699.7489.21380forward
CNT30205386Oryza glumipatulaHelianthus annuus29.6540.1480.14287forward
CNT30688678Oryza glumipatulaTriticum urartu48.2474.684.15467forward
CNT30350933Oryza glumipatulaEragrostis tef53.5166.1684.17518forward
CNT30476898Oryza glumipatulaArabidopsis halleri26.5555.7582.88257forward
CNT30366537Oryza glumipatulaSorghum bicolor92.25102.4179.96893forward
CNT30620207Oryza glumipatulaCajanus cajan20.979.4581.77203forward
CNT30596736Oryza glumipatulaOryza meridionalis80.06102.6594.71775forward
CNT30354836Oryza glumipatulaLactuca sativa26.7644.8980.69259forward
CNT30154777Oryza glumipatulaPrunus persica31.237.7582.12302forward
CNT30410012Oryza glumipatulaPapaver somniferum32.1381.8479.42311forward
CNT30573870Oryza glumipatulaVitis vinifera31.6143.482.03306forward
CNT30705862Oryza glumipatulaPrunus avium31.228.4481.13302forward
CNT30642143Oryza glumipatulaCannabis sativa2558.8882.64242forward
CNT3028162Oryza glumipatulaTheobroma cacao26.2445.2883.07254forward
CNT30109704Oryza glumipatulaOryza longistaminata23.2440.4799.56225forward
CNT30121049Oryza glumipatulaCitrus clementina31.227.9181.79302forward
CNT3035176Oryza glumipatulaCucumis melo24.6943.4580.75239forward
CNT30149777Oryza glumipatulaBrachypodium distachyon81.385.4584.63787forward
CNT30103004Oryza glumipatulaOryza rufipogon102.1799.292.21989forward
CNT30577473Oryza glumipatulaOryza barthii34.8161.8399.41337forward
CNT30584421Oryza glumipatulaEchinochloa crusgalli73.0487.7280.91707forward
CNT30497905Oryza glumipatulaDigitaria exilis90.697.1281.64877forward
CNT30176441Oryza glumipatulaVigna angularis33.9954.3879.64329forward
CNT30558075Oryza glumipatulaPanicum hallii81.299.6281.17786forward
CNT30551544Oryza glumipatulaOryza brachyantha51.8672.2391.04502forward
CNT30335475Oryza glumipatulaCynara cardunculus30.2722.5681.57293forward

Expression of CNT30370935

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MVSQRWASVLVSCQSPGLQHSLGVEVRWPAAASDH*

>peptide 2 (49 aa)
MIWCPRDGRACWCHAKVQAFNIAWELKFDGLLQHLIIEIQCTASCTDRCK

>peptide 3 (95 aa)
MQEMSDCMRVMSDCMRGKWGCKTEMLDCMMEMLGYMMVMWGCKMVMWGYKMVMWGCMQEKLDYMQEKSDYKLVMSDCSSEKWDYNLARSGCNLEM*

>peptide 4 (54 aa)
LVKSDYKGSALGCLESMRGKDCTWPKKDCSLVKLDCNLVKLGCSLEMSGCNQVM*

>peptide 5 (63 aa)
MMEKWDCSWVKQDYMMEKLGCILALDCIPEKMDCNHPLTMECSLVKVLVRKPFLQHMARTEHL*

Sequence

>CNT30370935
TTTGGTGAAGTCTGACTATAAGGGCTCAGCCTTGGGCTGCTTGGAGAGTATGCGTGGGAAGGACTGTACTTGGCCGAAGAAGGATTGTAGCTTGGTGAAG
TTGGACTGTAATTTGGTGAAGTTGGGCTGTAGCTTGGAGATGTCGGGCTGTAACCAGGTGATGTAGGGCTGTATGCAGGAGATGTCGGACTGTATGAGGG
TGATGTCGGACTGTATGAGGGGGAAGTGGGGCTGTAAGACGGAGATGTTGGACTGTATGATGGAGATGTTGGGCTATATGATGGTGATGTGGGGCTGTAA
GATGGTGATGTGGGGCTATAAGATGGTGATGTGGGGCTGTATGCAGGAGAAGTTGGACTATATGCAGGAGAAGTCGGACTATAAACTGGTGATGTCGGAC
TGTAGCTCGGAGAAGTGGGACTATAACTTGGCGAGGTCGGGCTGTAACTTGGAGATGTAGGGCTATAGCTAGGTGATGTAGGGCTGTAGCTTGGAGATGT
TGGCGAGTATGATGGACTGGTAGGTGAGTATGATGGACTTGTTGGCGAGTAAGTAGGAGAGCCAGGTGTATATGATGGAGAAGTGGGACTGTAGCTGGGT
GAAGCAGGACTATATGATGGAGAAGTTGGGCTGTATCCTGGCCCTGGACTGTATACCGGAGAAGATGGACTGTAACCACCCCCTGACGATGGAGTGTAGC
CTGGTGAAGGTACTGGTGAGAAAGCCATTCCTCCAACATATGGCGAGAACTGAGCATCTGTAATGGGGGAAGCCCTGATGTTTGGACTTAGCAGGTAGCT
CGGTGACATCATTCCTTCATGATATGGTGTCCCAGAGATGGGCGAGCGTGCTGGTGTCATGCCAAAGTCCAGGCCTTCAACATAGCTTGGGAGTTGAAGT
TCGATGGCCTGCTGCAGCATCTGATCATTGAGATACAATGCACAGCCTCCTGTACCGATAGGTGCAAG