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Detailed information on CNT30154777


BLAST search results

BLAST vs Swiss-Prot:
sp|P18616|NRPB1_ARATH, E-value = 4e-25

BLAST vs NONCODE:
NONGMAT000067, E-value = 6e-118

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523536Prunus persicaSetaria italica48.6268.8580.46389forward
CNT30536082Prunus persicaEucalyptus grandis72.6298.1481.24581forward
CNT30376704Prunus persicaArabidopsis thaliana96.597.9780.7772forward
CNT30378927Prunus persicaManihot esculenta52.3867.6983.29419forward
CNT30489004Prunus persicaOlea europaea35.8846.7483.28287forward
CNT30708216Prunus persicaGlycine max56.580.8684.07452forward
CNT30591858Prunus persicaMusa acuminata53.584.4281.07428forward
CNT30554721Prunus persicaOryza glaberrima4740.2180.05376forward
CNT30145737Prunus persicaMedicago truncatula53.7569.8180.23430forward
CNT30256659Prunus persicaAvena sativa3438.0482.35272forward
CNT30311656Prunus persicaCamelina sativa67.2596.9482.34538forward
CNT3062262Prunus persicaArabidopsis lyrata66.6297.2679.92533forward
CNT3076593Prunus persicaBrassica juncea67.7599.2782.1542forward
CNT3016767Prunus persicaZea mays49.7552.6580.9398forward
CNT30605857Prunus persicaGossypium raimondii95.8894.5779.92767forward
CNT3067979Prunus persicaLeersia perrieri36.7581.6781.29294forward
CNT30625810Prunus persicaDaucus carota41.7549.2680.54334forward
CNT30688491Prunus persicaTriticum urartu34.3864.2581.45275forward
CNT30341749Prunus persicaEragrostis tef4682.781.25368forward
CNT30476941Prunus persicaArabidopsis halleri96.596.3880.83772forward
CNT30366857Prunus persicaSorghum bicolor46.7538.0981.82374forward
CNT30596736Prunus persicaOryza meridionalis29.531.2683.05236forward
CNT30354836Prunus persicaLactuca sativa33.1245.9382.64265forward
CNT30370935Prunus persicaOryza glumipatula37.7531.282.12302forward
CNT30408809Prunus persicaPapaver somniferum82.1276.0480.52657forward
CNT30705862Prunus persicaPrunus avium10075.3392.75800forward
CNT30642025Prunus persicaCannabis sativa59.3892.5983.79475forward
CNT3027877Prunus persicaTheobroma cacao48.2597.7283.42386forward
CNT30330867Prunus persicaDioscorea rotundata68.2575.5279.49546forward
CNT30150463Prunus persicaBrachypodium distachyon40.3836.7580.5323forward
CNT30103173Prunus persicaOryza rufipogon36.6230.1881.91293forward
CNT30584450Prunus persicaEchinochloa crusgalli53.1256.7480.24425forward
CNT30558075Prunus persicaPanicum hallii34.3834.8582.91275forward
CNT30551544Prunus persicaOryza brachyantha41.6247.9181.08333forward

Expression of CNT30154777

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MWDYMQVKSGCKQVMLDCNLVKLDCNLEM*

>peptide 2 (29 aa)
FGDVGLYGLDGDNLGLLGEYADDGLYLAD*

>peptide 3 (50 aa)
MPFLQHREKTGHLKWVTDEGLGSANNLETSCPHDMEFPTLENEMVSYRNQD

Sequence

>CNT30154777
ATTTGGAGACGTAGGACTATATGGACTAGATGGTGATAATCTTGGACTGCTTGGAGAGTATGCCGATGATGGACTGTATTTGGCTGACTGAGGATTGTAA
CTTGGAGATGTAGGGCTATAGCTGGGAGAAGTTGGACTATAACTAGGAGAAGTTGGGCTGTAACCAGGAGAAGTTGGGCTGTAGGCCGGTGAGGTTGGGC
TGTAGGATGGAGATGTGGGGCTGTAGGAGGGCGACGTTGGGCTGTAGGAAGGTGATGTAGGGCTATAGGAAGGCGATGTAGGGCTGTAGGAAGGTGATGT
GGGACTATATGCAGGTGAAGTCGGGCTGTAAGCAGGTGATGTTGGACTGTAACTTGGTGAAGTTGGACTGTAACTTGGAGATGTAGGGCTGTAACTTGGA
GATGTGGGGCTGTAACTTGGAGAAGTGGGGCTATAGCTGGGTGAGGTGGGTGAGTATGATGGACTTGTAGGAGAATAGGCCGGACTGGTTGGACTATAAC
CTGGAGAACTAGGACTATAGGTTGGAGAGGTGGGACTGTACCCAGGAGAAGTGGGGCTGTACCCGGGCGAGGTGGGACTATAACCAGGGGACGACGGACT
GTAGCCAGGGGATGATGGGCTGTAGCCCGGAGATGAAGTAGGAGAGAATGCCATTCCTCCAACATAGGGAGAAAACTGGGCATCTGAAATGGGTGACAGA
CGAAGGTTTGGGCTCAGCAAATAATTTGGAGACATCATGCCCTCATGATATGGAGTTCCCGACACTGGAGAACGAGATGGTGTCATACCGAAATCAAGAC