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Detailed information on CNT30584450


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSTUT001430, E-value = 5e-38

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675703Echinochloa crusgalliSetaria viridis20.8355.5294.23156forward
CNT30536082Echinochloa crusgalliEucalyptus grandis23.529.7382.95176forward
CNT30516792Echinochloa crusgalliJuglans regia25.521.4680.1191forward
CNT30376704Echinochloa crusgalliArabidopsis thaliana21.0920.0584.18158forward
CNT30616515Echinochloa crusgalliSesamum indicum31.5135.0179.66236forward
CNT30269232Echinochloa crusgalliChenopodium quinoa29.9135.2282.14224forward
CNT30727661Echinochloa crusgalliCorchorus capsularis32.5838.9880.33244forward
CNT30378927Echinochloa crusgalliManihot esculenta26.5732.1581.41199forward
CNT3042435Echinochloa crusgalliPrunus dulcis26.728.982.5200forward
CNT3091613Echinochloa crusgalliSolanum tuberosum32.1831.8880.5241forward
CNT30234460Echinochloa crusgalliBrassica oleracea28.9730.8782.49217forward
CNT30508904Echinochloa crusgalliSolanum lycopersicum32.183980.91241forward
CNT30145737Echinochloa crusgalliMedicago truncatula24.9730.3680.75187forward
CNT30312132Echinochloa crusgalliCamelina sativa26.9731.1782.67202forward
CNT3062262Echinochloa crusgalliArabidopsis lyrata25.134.3184.04188forward
CNT3079663Echinochloa crusgalliBrassica juncea24.9735.1583.42187forward
CNT3016767Echinochloa crusgalliZea mays70.4969.8486.17528forward
CNT30608057Echinochloa crusgalliGossypium raimondii26.1733.0583.16196forward
CNT30687113Echinochloa crusgalliTriticum urartu31.5144.3683.9236forward
CNT30476941Echinochloa crusgalliArabidopsis halleri23.121.684.39173forward
CNT30354818Echinochloa crusgalliLactuca sativa15.6222.3782.91117forward
CNT30154777Echinochloa crusgalliPrunus persica26.72582.5200forward
CNT30573870Echinochloa crusgalliVitis vinifera31.5133.4881.78236forward
CNT30109704Echinochloa crusgalliOryza longistaminata16.6922.4882.4125forward
CNT30150463Echinochloa crusgalliBrachypodium distachyon44.4637.8883.78333forward
CNT30551544Echinochloa crusgalliOryza brachyantha30.1732.5286.28226forward

Expression of CNT30584450

Peptides detected in this lncRNA

>peptide 1 (34 aa)
SLEKSDCMESSLGCLESMHVKDCIWLMKDYSSEK*

>peptide 2 (34 aa)
MMDCIPLKMESSHLVMEMVRMPCAQHMVRTKHLY*

Sequence

>CNT30584450
GTAGTTTGGAGAAGTCTGACTGTATGGAGTCATCCTTGGGCTGCTTGGAGAGTATGCATGTGAAGGACTGTATTTGGCTGATGAAGGATTATAGCTCGGA
GAAGTAGGACTGTAGCTCGGTGATGTCGGGCTGTAACTTGGTGATGTTGGGCTGTATCCAGGCGAGGTAGGGCTGTATGCAGGGGAGGTAGGGCTGTATG
AGGGGGATGTAGGGCTGTATGAGGGGGATGTAGGGCTGTATGAAGGCGATGTTGGGCTATAAGATGGTGATGTTGGGCTATAAGATGGCGATGTGGGGCT
GTATGCAGGAGATGTAGGGCTATATGCTGGCGAGGTTGGACTATAAACTGGCGAGGTGGGGCTGTAGCTTGGTGACGTAGGACTGTAGCTCGGAGATGTA
GGGCTGTAGCTAGGAGATGTAGGGCTGTAACTCGGAGATGTGGGCGAGTATGATGGACTGGTGGGGGAGTATGTTGGACTTGTTGGCGAGTAATTCGGGC
TTGTAGGACTGTAAGTGGGAGAGCCAGGTGTATATGATGGTGAGGTGGGGCTATAGCTTGGTGATGCAGGGCTGTATGATGGAGAAAGAGGGCTATATCC
TTTCTCTGGGGTGAAAACTGGAGATGATGGACTGTATCCCCCTGAAGATGGAGAGTAGCCACCTGGTGATGGAAATGGTGAGAATGCCATGTGCCCAACA
TATGGTGAGAACGAAGCATCTGTATTAATGGGGGAAGCCCTGATGTTTG