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Detailed information on CNT30501067


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6VAF9|TBA4_GOSHI, E-value = 4e-150

BLAST vs NONCODE:
NONGMAT000220, E-value = 2e-49

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694759Coffea canephoraOryza sativa51.3174.6581.67371forward
CNT30678108Coffea canephoraSetaria viridis85.7568.2884.03620forward
CNT30522101Coffea canephoraSetaria italica46.6131.7983.98337forward
CNT30640127Coffea canephoraNymphaea colorata44.2640.184.38320forward
CNT30533600Coffea canephoraEucalyptus grandis38.0473.5386.91275forward
CNT30547493Coffea canephoraIpomoea triloba90.3258.4185.91653forward
CNT30517675Coffea canephoraJuglans regia32.538.9185.96235forward
CNT30371538Coffea canephoraArabidopsis thaliana28.7743.7985.58208forward
CNT30618173Coffea canephoraSesamum indicum31.5428.7587.72228forward
CNT30729860Coffea canephoraCorchorus capsularis42.1932.9786.23305forward
CNT3071006Coffea canephoraQuercus suber41.2261.784.56298forward
CNT30379228Coffea canephoraManihot esculenta41.6334.5285.05301forward
CNT30403515Coffea canephoraBeta vulgaris32.591.4485.53235forward
CNT30507454Coffea canephoraNicotiana attenuata42.4647.387.3307forward
CNT30709081Coffea canephoraGlycine max90.7387.2383.69656forward
CNT3098615Coffea canephoraSolanum tuberosum34.4448.5485.14249forward
CNT30177336Coffea canephoraSecale cereale89.4956.4684.39647forward
CNT30294619Coffea canephoraTriticum aestivum63.3554.3985.81458forward
CNT30220716Coffea canephoraHordeum vulgare13.5542.9886.7398forward
CNT30391405Coffea canephoraTriticum turgidum43.0240.9785.85311forward
CNT3085161Coffea canephoraVigna radiata41.6342.9485.71301forward
CNT30555281Coffea canephoraOryza glaberrima42.637.281.49308forward
CNT30144688Coffea canephoraMedicago truncatula2652.9686.7188forward
CNT30439881Coffea canephoraAegilops tauschii43.0240.5584.89311forward
CNT30247895Coffea canephoraAvena sativa37.0735.7385.07268forward
CNT30655883Coffea canephoraTriticum dicoccoides41.9142.4486.14303forward
CNT3075316Coffea canephoraBrassica juncea35.9687.5481.54260forward
CNT30265526Coffea canephoraBrassica rapa31.422.8685.9227forward
CNT30611949Coffea canephoraArabis alpina21.4444.883.23155forward
CNT30445643Coffea canephoraSaccharum spontaneum46.237.6684.43334forward
CNT30136973Coffea canephoraLolium perenne28.2248.5789.22204forward
CNT30953Coffea canephoraZea mays44.9534.3684.62325forward
CNT3041219Coffea canephoraChlamydomonas reinhardtii22.1328.0785160forward
CNT30606894Coffea canephoraGossypium raimondii48.8296.7184.14353forward
CNT30219368Coffea canephoraKalanchoe fedtschenkoi25.1731.1685.71182forward
CNT30655223Coffea canephoraRosa chinensis19.9256.6982.64144forward
CNT30208739Coffea canephoraHelianthus annuus29.3253.6787.26212forward
CNT30716286Coffea canephoraMalus domestica golden51.5928.5686.6373forward
CNT30689745Coffea canephoraTriticum urartu28.3526.987.32205forward
CNT30721298Coffea canephoraTriticum spelta17.2938.4689.6125forward
CNT30362155Coffea canephoraSorghum bicolor41.4927.584.67300forward
CNT30619808Coffea canephoraCajanus cajan25.1730.5986.26182forward
CNT30597072Coffea canephoraOryza meridionalis33.4733.3382.23242forward
CNT30359250Coffea canephoraLactuca sativa51.3154.5678.98371forward
CNT30371316Coffea canephoraOryza glumipatula42.1925.8581.31305forward
CNT30570163Coffea canephoraVitis vinifera41.3636.1184.95299forward
CNT3052700Coffea canephoraAmborella trichopoda43.4399.3782.8314forward
CNT30106557Coffea canephoraOryza longistaminata20.1968.2283.56146forward
CNT3024647Coffea canephoraPopulus trichocarpa42.1958.8882.3305forward
CNT30119652Coffea canephoraCitrus clementina30.7129.1381.53222forward
CNT30331462Coffea canephoraDioscorea rotundata26.4237.1681.68191forward
CNT30147962Coffea canephoraBrachypodium distachyon27.2558.1183.76197forward
CNT30104256Coffea canephoraOryza rufipogon42.623.6981.49308forward
CNT30575645Coffea canephoraOryza barthii85.627381.58619forward
CNT30582828Coffea canephoraEchinochloa crusgalli42.635.984.09308forward
CNT30117881Coffea canephoraOryza nivara60.0350.1781.57434forward
CNT30558847Coffea canephoraPanicum hallii43.0242.1484.89311forward
CNT30726375Coffea canephoraLupinus angustifolius47.5893.2284.3344forward
CNT3040082Coffea canephoraMarchantia polymorpha35.4160.9582.81256forward

Expression of CNT30501067

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MYPRVGHKIGVFRAFYVKRAPANVIDGLIVKKYCNISVLKKGMGRQHTVVGLYNRS*

>peptide 2 (90 aa)
VTTRYNSWWLIVDTTLESGGAPVDKLDGPLGLDCCHSSINIFWHNITTEHQAASHVLPMAGITLGHHGRWLKSTVGYLRNCKLLMVGLLR*

>peptide 3 (59 aa)
MVLLVLIVATAALTSFGTTSPRNIRQQAMYFPWRGSHLAIMEDGSKALLVISATVSCSW*

Sequence

>CNT30501067
GGTCACCACAAGGTACAACAGTTGGTGGCTGATAGTTGATACCACACTTGAATCCGGTGGGGCACCAGTCGACAAACTGGATGGTCCTCTTGGTCTTGAT
TGTTGCCACAGCAGCATTAACATCTTTTGGCACAACATCACCACGGAACATCAGGCAGCAAGCCATGTACTTCCCATGGCGGGGATCACACTTGGCCATC
ATGGAAGATGGCTCAAAAGCACTGTTGGTTATCTCCGCAACTGTAAGTTGCTCATGGTAGGCCTTCTCCGCTGAAATAACAGGAGCAAATGAGGAAAGCA
TAAAATGTATCCTCGGGTAGGGCACAAGATTGGTGTATTTCGGGCGTTCTATGTCAAGCGAGCGCCTGCAAATGTCATAGATGGCCTCATTGTCAAGAAG
TACTGCAACATCAGTGTGCTCAAGAAGGGAATGGGTCGACAGCACACTGTTGTAGGGCTCTACAACAGAAGTTGAGACCTGGGGAGAAGGATAGATGGTG
AAACCAAGCTTTGACTTCTTGCCATAGTCAACAGACAACCGCTCCAGCAGAAGTGATCCAAGACCAGAACCAGTGCCACCACCAACAGCATTGAAAAACA
AAAACCCTTGAAGACCAGTGCAGTTGTCGGCCAGCTTCCTGATGCGATCCAAGCAAAGATCAACAATCTCTTTGCCAATGGTGTAGTGGCCACGGGCAAA
GTTGTTGGCAGCATCTTCCTTGC