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Detailed information on CNT30716286


BLAST search results

BLAST vs Swiss-Prot:
sp|P33628|TBA_PICAB, E-value = 4e-64

BLAST vs NONCODE:
NONGMAT000220, E-value = 1e-70

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694759Malus domestica goldenOryza sativa33.0886.9281.94432forward
CNT30678671Malus domestica goldenSetaria viridis24.8940.0787.08325forward
CNT30521842Malus domestica goldenSetaria italica26.3437.2786.34344forward
CNT30547493Malus domestica goldenIpomoea triloba25.8830.2385.5338forward
CNT30517675Malus domestica goldenJuglans regia19.3741.8986.17253forward
CNT30372848Malus domestica goldenArabidopsis thaliana10.9523.8384.62143forward
CNT30501067Malus domestica goldenCoffea canephora28.5651.5986.6373forward
CNT30727923Malus domestica goldenCorchorus capsularis26.6529.3987.93348forward
CNT30379324Malus domestica goldenManihot esculenta18.5325.0585.95242forward
CNT30403515Malus domestica goldenBeta vulgaris18.4593.7788.8241forward
CNT30493173Malus domestica goldenOlea europaea12.4839.4784.05163forward
CNT30177336Malus domestica goldenSecale cereale26.6530.3785.92348forward
CNT30296175Malus domestica goldenTriticum aestivum16.1672.2686.73211forward
CNT30220716Malus domestica goldenHordeum vulgare7.6643.8687100forward
CNT30391993Malus domestica goldenTriticum turgidum16.1688.6686.73211forward
CNT30562914Malus domestica goldenActinidia chinensis17.5375.3382.97229forward
CNT30237104Malus domestica goldenBrassica oleracea14.2457.4183.87186forward
CNT30555279Malus domestica goldenOryza glaberrima20.686.2286.25269forward
CNT3075316Malus domestica goldenBrassica juncea19.9187.5486.15260forward
CNT30265526Malus domestica goldenBrassica rapa23.5831.0283.44308forward
CNT30611949Malus domestica goldenArabis alpina18.7670.8185.31245forward
CNT30445136Malus domestica goldenSaccharum spontaneum26.8849.8684.33351forward
CNT30229091Malus domestica goldenAnanas comosus5.5120.1187.572forward
CNT30210906Malus domestica goldenHelianthus annuus15.7778.9382.52206forward
CNT30683531Malus domestica goldenTriticum urartu11.1847.5686.99146forward
CNT30362155Malus domestica goldenSorghum bicolor22.2126.5887.24290forward
CNT30619808Malus domestica goldenCajanus cajan13.4829.5886.93176forward
CNT30597159Malus domestica goldenOryza meridionalis14.1725.5588.65185forward
CNT30356256Malus domestica goldenLactuca sativa16.6942.0883.49218forward
CNT30371316Malus domestica goldenOryza glumipatula24.9627.6385.28326forward
CNT3056297Malus domestica goldenAmborella trichopoda7.530.5383.6798forward
CNT30106559Malus domestica goldenOryza longistaminata6.6638.8487.3687forward
CNT3024647Malus domestica goldenPopulus trichocarpa25.564.2988.59333forward
CNT30331462Malus domestica goldenDioscorea rotundata21.955.6480.77286forward
CNT30147962Malus domestica goldenBrachypodium distachyon15.0157.8287.76196forward
CNT30104286Malus domestica goldenOryza rufipogon10.5720.6386.23138forward
CNT30575645Malus domestica goldenOryza barthii25.4239.1587.05332forward
CNT30496537Malus domestica goldenDigitaria exilis9.856.6483.59128forward
CNT30174517Malus domestica goldenVigna angularis13.7189.0581.01179forward

Expression of CNT30716286

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MLSSSSFTKEGVEGIITSTDGLVTRHLAIRL*

>peptide 2 (97 aa)
MTVGSRSTNTARGTCFPAPVSLKKVLKASSPPPMVLSLGIWPSGCKRTQKINKQLNNKFKAFTSTRNKFSKQSAVKRINLFHPKMISKTQEEKKLTK*

>peptide 3 (39 aa)
AVEVGVGGSLNVKRAPADIIDSLVVKEHCNISVFQEGVG*

Sequence

>CNT30716286
GCGGTTGAGGTTGGTGTAGGTGGGTCGCTCAATGTCAAGAGAGCGCCTGCAGATATCATAGATAGCCTCGTTGTCAAGGAGCACTGCAACATCAGTGTGT
TCCAGGAGGGAGTGGGTTGAGAGGACACTGTTGTAGGGCTCAACCACAGATGTAGAAACCTGTGGAGATGGATACACGGTGAACCCAAGCTTTGACTTCT
TTCCATAGTCAACAGAGAGACGCTCCAAAAGAAGGGACCCAAGACCAGAGCCAGTTCCTCCACCAACAGCATTGAAAACAAGGAACCCTTGAAGCCCAGT
GCAGTTGTCAGCAAGTTTACGGATGCGGTCCAAGCAGAGATCAACAATCTCCTTGCCGATGGTGTAGTGACCACGGGCAAAGTTGTTGGCAGCATCTTCC
TTGCCACTAATGAGTTGCTCAGGGTGGAAGAGCTGGCGGTAAGTTCCGGTCCTCACTTCATCAATGACAGTGGGCTCAAGATCAACAAACACAGCGCGAG
GCACATGCTTTCCAGCTCCAGTTTCACTAAAGAAGGTGTTGAAGGCATCATCACCTCCACCGATGGTCTTGTCACTAGGCATTTGGCCATCAGGCTGTAA
AAGAACACAGAAAATTAACAAACAGCTGAATAACAAATTCAAAGCATTCACATCGACTCGTAACAAATTTTCAAAACAAAGCGCTGTTAAAAGAATTAAC
CTATTCCATCCAAAAATGATCAGCAAGACACAAGAAGAAAAAAAGCTGACAAAGTGAATAGGATGGACGTAGATTAATTTGAGGGACTTGTTCATCCCAA
TAGCACTCAAACCACTGCTAACGGGCAGACGTAAAGTCCCAATTACAAAACCAAATGAGACAATATTTCAAAACAATAAATGGCAATCAATCCATTGACG
ATTTCACCATCACATTTCAATAAAAGCACAAAGTATTGAAAATAAAAAAATCGGTTGAATTAAAATACAATTACAACTCAAACTCCGAATTTTCAGAATA
TGCAATTTTTCGGTCAATAAAAACAGCACTGAATCATAGATCCAAGGAAAATCAAATGATTTGACAACACCAGTAACATTAATTTTCGCATACAAATCAA
AATTAACATTTCTGGGTGTATCCGATGGTCAGAAAACACGAATCTGATCGATAACTGAGTCAAATCCAGATAAAATCACAAAGAATCAGTGCGCAATAGT
CACATATCTATCCGAAACCGAACAAATCACAAATCGAAAATGCAAACGTGCATACGAACAAAATCGATAGATAAATGTAGAGAGAGAGAGAGAGAGAGAG
AGAGAG